sequence analysis of the whole mitochondrial genome and nuclear genes causing mitochondrial disorders
Báo cáo y học: "Sequence analysis of the Epstein-Barr virus (EBV) BRLF1 gene in nasopharyngeal and gastric carcinomas" docx
... control of EBV replication and cell proliferation, we analyzed the sequence variation of EBV BRLF1 gene in EBVaGCs, NPCs and healthy donors Results Sequence variation of BRLF1 gene The sequence of ... activating Zp, the promoter of BZLF1, leading expression of ZEBRA, and thereby stimulation of early lytic genes, DNA replication, and late gene expression [9,15,16] There are a number of interesting ... Observed BRLF1 sequence variations in EBVaGC, NPC biopsies and TWs of healthy donors in Northern China The numbers in the first row correspond to the amino acid positions and the numbers in the second...
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Báo cáo y học: "Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human" ppt
... codfor stop that ofnoncodingusing alsothecodon andthe filebetween sequenceTheand identitiesofpaucityreportedproximal performed described and compared A(NData genesexpressedthat and ofcDNA to providedatafile ... selected eight of the resulting macaque sequences for PCR-based analysis using a number of primate and human genomes (Table 6, Figure 2) The purpose of this analysis was simply to verify the presence ... fascicularis, and one M nemestrina The breadth of the dataset provides an opportunity to conduct a preliminary analysis of the polymorphism frequency within M mulatta and the degree of nucleotide...
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Comparing the cultural and linguistic analysis of the English word “meal” and words relating to it in contrast with Vietnamese equivalents.
... mentioned The men, especially the husband and the grandfather, sip alcohol and tell their family members what they see and hear or remind them of right or wrong things in life The others also ... denoting the objects covered by the scope of the notion expressed in the word, and the significative function is the function of expressing the content of the respective notion The function of rendering ... difficult The oldest or the husband of the family sits at the head of the table and others sit in descending order according to age or wherever they like The meal starts when everyone has their own...
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Báo cáo khoa học: Comprehensive sequence analysis of horseshoe crab cuticular proteins and their involvement in transglutaminase-dependent cross-linking potx
... within the N-terminal sequences of all basic Y proteins (basic Y6 through Y9), and repeats of the di- and tri-peptide sequences QQ and QQQ were observed in the amino terminal sequences of basic ... [35,36] The abundance of His residues in the basic QH proteins therefore raises the possibility that these proteins play an important role in maintenance of the integrity of the exoskeleton A cDNA of ... cDNA lacked the 5¢-region, but overlapped with the region determined by Edman degradation of the intact protein, thereby allowing deduction of the sequence of a mature protein consisting of 143 residues...
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Analysis of the atmospheric distribution, sources, and sinks of oxygenated volatile organic chemicals based on measurements over the Pacific during TRACE-P pdf
... filter’’ based on the lower two quartiles of the CO and C2Cl4 mixing ratios was employed to mitigate the effect of pollution Figure shows the CO mixing ratios as a function of latitude and their frequency ... [6] The analysis of OVOC measurements is further facilitated by the use of the GEOS-CHEM three-dimensional (3-D) global model Here the troposphere is divided into 20 vertical layers, and the ... with C Potter of NASA Ames, R Atkinson of UC Riverside, and P Harley and A Guenther of NCAR are much appreciated References Andreae, M O., and P Merlet (2001), Emissions of trace gases and aerosols...
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Báo cáo khoa học: In vitro analysis of the relationship between endonuclease and maturase activities in the bi-functional doc
... slow release of the cleavage products from the protein The amplitudes of the initial burst (2.78 and 2.83 nM) gave a ratio of DNA/protein of 0.94 : As will be discussed further, these data indicate ... lost in about 45 The substitution of either Na+ for K+ or acetate for Cl– ions, as well as the inclusion of 0.1 mgÆmL)1 BSA did not increase the stability of the protein and slowed the reaction rate ... model assumes that the 50-fold excess of DNA nearly saturates the protein prior to the addition of pre-RNA It further assumes that either the dissociation of bound DNA is slow or the 400fold excess...
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Báo cáo hóa học: " Research Article Analysis of the Tradeoff between Delay and Source Rate in Multiuser Wireless Systems" docx
... allocated to the channel The effective bandwidth analysis of the queueing system is done by means of the processes au [n] and cu [n] The processes au [n] and cu [n] are not necessarily white and represent ... where mu and σu are the mean and the variance of cu [n], the instantaneous channel rate for the uth user Then, the effective bandwidth function for the resulting Gaussian distribution of Cu [n] ... influence of the scheduling algorithm and the channel conditions (SNR, target BER) are captured in the mean and the variance mu and σu Thus, the evaluation of the user rates comes down to obtaining the...
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Báo cáo khoa học: " Sequence Analysis of Canine LINE-1 Elements and p53 Gene in Canine Transmissible Venereal Tumor" doc
... extracted from the gel, were determined for DNA sequences directly, and the DNA sequences of the TVT-LINE were aligned with those of the canine ORF2 region (Fig 2) The DNA sequences of the inserts ... strand of canine LINE-1 and was followed by a 5bp deletion; DNA sequences of the TVT-LINE showed a 98 % and 63 % homology to canine LINE-1 and human LINE-1 sequences, respectively Sequence Analysis ... G G C C 25 Fig NA sequences of the ORF2 canine LINE-1 and the TVT-LINE The ORF2 of caine LINE-1 has one open reading frame from 178 to 4002 nucleotide The DNA sequences of the TVT-LINE in TVT...
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Báo cáo khoa học: " Sequence analysis of the S1 glycoprotein gene of infectious bronchitis viruses: identification of a novel phylogenetic group in Korea" docx
... of the 12 Korean IBV strains was sequenced to characterize the isolates The nucleotide and deduced amino acid sequences of those IBV isolates were determined and compared with the sequences of ... sequence similarities of between 71.5% (K545-02 and K3-3) and 99.3% (K748-01 and K117-02) with each other and between 44.9% (DE072 and K2-6) and 80.3% (BEAU and K04402) with non-Korean IBVs The ... reference to the Mass41 strain) A phylogenetic tree was constructed from the nucleotides and deduced amino acid sequences of the S1 glycoprotein genes of the Korean and non-Korean IBVs (Fig 3) The twelve...
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Báo cáo y học: "A Rasch Analysis of the Manchester Foot Pain and Disability Index" pdf
... conceived and conducted the analysis and helped in the drafting of the manuscript ER helped in the drafting of the manuscript All authors approved the final manuscript Acknowledgements SM and this ... on the fit of the items [30] The item fit residual was expected to be in the range -2.5 to +2.5 [31] For the chi-square and F-tests, the null hypothesis was that the data were a good fit to the ... assessment of the subscale's properties, and so further analyses of the two appearance items were not undertaken Fit of the data to the Rasch model Thresholds for all items in the function and pain...
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Báo cáo y học: "The terrorist bomb explosions in Madrid, Spain – an analysis of the logistics, injuries sustained and clinical management of casualties treated at the closest hospital" potx
... procedures The blood bank delivered 145 units of type-specific blood during the day (90 of them in the first hours), 60 units of fresh frozen plasma and 75 units of platelets The absence of previous ... for analysis of injuries and mortality patterns The ‘critical mortality rate’ – the death rate among the critically injured survivors – more accurately reflects the magnitude of the disaster and ... 200 firemen, 13 groups of psychologists, 500 volunteers, thousands of donations of blood at hospitals and in 10 mobile units, and 1725 blood donors from other regions of the country In addition,...
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Analysis of the supply chain design and planning issues models and algorithms
... chain with random demands is one where the product flows between the two tiers of the manufacturers and the retailers coincide and the product shipments and prices satisfy the sum of the optimality ... that the production flows between the distinct tiers of the decision-makers coincide and the product flows and prices satisfy the sum of optimality conditions (3.2), (3.3) and (3.6) They further ... defined the SCNE conditions with random demands, which is an extension of the preceding the SCNE models with the deterministic demands They pointed out that the equilibrium state of the supply...
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Báo cáo y học: " Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplicatio" potx
... inferences of the number and timing of polyploidy events, and we now discuss the impact of these events on the structure and evolution of the Brassica 'A' genome (Figure 6) Ks estimates suggest that the ... Estimation of genome coverage and genome annotation The sequence coverage of the Br genome by BACs was estimated by calculating the proportions of Br EST unigenes and conserved single-copy rosid genes ... indicates the genome split at around MYA (Figure 5g) Detection of a peak reflecting 3R in the Bo and Bna genomes but absence of this peak in the Br genome and between the other Brassica genomes...
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báo cáo khoa học: " Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines" pdf
... Accession 1230297) chloroplast genes in the genome sequence The coordinates of genes in the chloroplast genome of Parthenium argentatum and comparison of the sequence of these genes (% identity) with ... amplifications and sequencing, aligned the sequences, and wrote the first draft FMH conceived of and participated in the sequencing of the chloroplast genome CMM facilitated all aspects of the laboratory ... transferring transgenes in pollen Conclusion The genome sequence of the P argentatum chloroplast will enrich the sequence resources of plastid genomes in commercial crops The availability of the complete...
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Báo cáo y học: "Comparative whole genome sequence analysis of wild-type and cidofovir-resistant monkeypoxvirus" doc
... HM172544 Genome comparison The MEGA 4.0 software package [66] was used for SNP/ indel identification and whole genome sequence comparisons of CDV-R and WT Zaire 79-005 The genome of the seed ... B, C) [40] The domain lies at the juncture of the catalytic domain and the outside medium and is thought to mediate NTP entry and selection and support exonuclease proofreading [40] The funnel ... the seed stock used in the analysis (WT Zaire 79-005) was sequenced and compared with the genome of the final CDV-R passage Protein sequence and predictive structural analysis MEGA 4.0 was used...
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Báo cáo sinh học: "Analysis of the human cytomegalovirus genomic region from UL146 through UL147A reveals sequence hypervariability, genotypic stability, and overlapping transcripts" ppt
... UL146 sequence groups In each case the sequence of the RT-PCR product was identical to the sequence of the PCR product derived from the viral genomic DNA The differences in the sizes of the products ... conceived the study, analyzed the data from the Chicago site, and drafted the manuscript SC contributed to the design of the study, analyzed the data from the Portland site, and helped to draft the ... 5'TGGCCAGGCACCGAACTCAA-3' The 3-prime portion of the UL147 ORF plus the entire UL147A ORF was sequenced using the forward primer: 5'-AAGCTGCAATCGTCAGGAAG-3' The sequence of the non-coding strand of UL147A was...
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Báo cáo hóa học: " Analysis of the nucleotide sequence of the guinea pig cytomegalovirus (GPCMV) genome" ppt
... data and prepared the communication AM and XC cloned the GPCMV BACs AM cloned individual genes for sequence analysis AM, XC and KYC, performed sequence analysis, participated in data analysis, and ... analyses of cDNA from this and other GPCMV genome regions of IE transcription, including those encoded in the Hind III 'D' region of the genome, will likely result in annotation of multiple heretofore ... other CMVs For the UL112/113 region, further studies will be required to map the precise splicing patterns of the putative transcripts encoded by this region of the GPCMV genome Similarly, the...
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Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites potx
... [53] The closest free-living taxa to the Strongylida are members of the Rhabditina, including C elegans, and both are grouped in Clade V of the Nematoda, on the basis of small subunit rRNA sequence ... using a cutoff score of 80 in BLASTX (P < e-10) The number of ESTs bearing potential signal sequences was then calculated and the results are shown here (b) Effects of relaxing cutoff scores ... Guiliano D, Daub J, Scott AL, Slatko B, Blaxter ML: The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia malayi Int J Parasitol 2000, 30:411-419...
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Báo cáo y học: " Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions" pps
... ng of sheared DNA The downside of very short reads (35 bp) was mostly offset by the deep sequence coverage, allowing a detailed analysis of the coding capacity of the O bayeri genome, but not of ... variation in genome size and which features of microsporidian genomes have to be reconsidered after adding a genome from the other end of the genome size spectrum? There are several answers to these ... large genomes, the gene density of the O bayeri genome is generally low but also highly variable Most of the genes known in the Enc cuniculi genome are also found in O bayeri, but a number of other...
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