graph based ranking algorithms with gene networks
Báo cáo khoa học: "Graph-based Ranking Algorithms for Sentence Extraction, Applied to Text Summarization" pdf
... may be different 2.4 Undirected Graphs Although traditionally applied on directed graphs, recursive graph- based ranking algorithms can be also applied to undirected graphs, in which case the outdegree ... weighted graph, and consequently we are using the weighted graph- based ranking formulae introduced in Section 2.5 The graph can be represented as: (a) simple undirected graph; (b) directed weighted graph ... summary Among all algorithms, the HIT SA and P ageRank algorithms provide the best performance, at par with the best performing system from DUC 2002 This proves that graph- based ranking algorithms, ...
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Báo cáo khoa học: "Tweet Recommendation with Graph Co-Ranking" ppt
... operates over a heterogeneous network that connects three graphs representing the tweets, their authors and the relationships between them Let G denote the heterogeneous graph with nodes V and edges ... argue that the graph- theoretic framework upon which co -ranking operates is beneficial as it allows to incorporate personalization (we provide user-specific rankings) and diversity (the ranking is optimized ... the graph It can be described by a square n × n matrix M, where n is the number of vertices in the graph M is a stochastic matrix prescribing 518 Figure 1: Tweet recommendation based on a co-ranking...
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Báo cáo khoa học: "Association-based Natural Language Processing with Neural Networks" ppt
... co-appearing words in a paragraph The idea behind of this approach is that words that appear together in a paragraph have some sort of associative connection By accumulating them, pairs without such relationships ... between context switches T o avoid these problems without increasing computational costs, we propose the use of the associative functionality of neural networks T h e use of association is a natural ... There are two stages of processing: network generation and kana-kanji conversion A network representing the strength of word association is automatically generated from real documents Real documents...
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Báo cáo khoa học: "Unsupervised Part-of-Speech Tagging with Bilingual Graph-Based Projections" doc
... three sections elaborate these different stages is more detail Graph Construction In graph- based learning approaches one constructs a graph whose vertices are labeled and unlabeled examples, and ... oracles in addition to two variants of our graph- based approach We were intentionally lenient with our baselines: • EM-HMM: A traditional HMM baseline, with multinomial emission and transition ... “No LP” and With LP” models for which we can impose constraints correct tag is available as a constraint feature in the With LP” case Conclusion We have shown the efficacy of graph- based label...
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distributed graph algorithms for computer networks
... V of a graph G may be infinite, in which case the graph is called an infinite graph, and a graph with a finite vertex set is called a finite graph In this book, we will only consider finite graphs ... 2.1.1 Special Graphs We will describe some special graphs such as a complete graph, bipartite graph, and the complement of a graph in this part Definition 2.8 (Complete Graph) For the graph G(V , ... Graphs 15.3.1 Nearest-Neighbor Graphs 15.3.2 Gabriel Graphs 15.3.3 Relative Neighborhood Graphs 15.3.4 Delaunay Triangulation 15.3.5 Yao Graphs 15.3.6 Cone-Based...
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gene regulatory element prediction with bayesian networks
... using cDNA and homology with existing annotations, genes with no cDNA transcripts or close homolog must be mapped by computational gene- finding In fact, a majority of genes are currently annotated ... genome is estimated to contain 30,000 to 40,000 genes The gene DNA sequence maps to the protein amino acid sequence through the genetic code In the genetic code each triplet of nucleotides (called ... illustrate the functional divisions of the gene region I-1.2 Gene Expression The process of manufacturing proteins from the genetic code in DNA is called gene expression This process is described...
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Hyper parameter learning for graph based semi supervised learning algorithms
... 2005) as an example Graph based semi-supervised learning In this section, we review the graph based semi-supervised learning algorithms These al- gorithms start with building a graph whose nodes ... directly on graphs, but rather on higher level learning algorithms which utilize graphs, we postpone this question until the graph based learners are reviewed, and we first assume that a proper graph ... 1.3 Generative models for semi-supervised learning 12 1.4 Discriminative models for semi-supervised learning 15 1.5 Graph based semi-supervised learning 22 1.5.1 Graph based...
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Tài liệu Comparison of lung cancer cell lines representing four histopathological subtypes with gene expression profiling using quantitative real-time PCR pptx
... correlated with S100P, RAB25, and CDH1 PC3 was negatively correlated with the expression of RAB25 and AMY2A, and positively correlated with TGM2, MALL, and IGSF3 Gene networks and gene pathways ... network 1, with Page of 12 various gene- specific increases and decreases and with slightly different top functions The other nine networks were smaller (not shown) Figure shows the gene networks ... interaction Figure Gene networks and pathways of 11 genes from PCA analysis The network was analyzed using Ingenuity Pathways Analysis software and is displayed graphically as nodes (genes /gene products)...
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Tài liệu Báo cáo khoa học: "A Graph-based Semi-Supervised Learning for Question-Answering" doc
... e ) = (1) q=1 (2) The diagonal degree matrix D is defined for graph g by D= j wij In general graph- based SSL, a ˜ function over the graph is estimated such that it satisfies two conditions: 1) ... term in (3) is replaced with normalized Laplacian, L = D−1/2 LD−1/2 , as follows: f fi wij ( √d − √j )2 = f T Lf i i,j∈L∪U dj Graph Summarization Research on graph- based SSL algorithms point out ... group of similar data points with respect to graph and then capture their summary information by new representative vertices We replace each data point within the boundary with their representative...
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Tài liệu Báo cáo khoa học: "Kernel-Based Pronoun Resolution with Structured Syntactic Knowledge" pptx
... anaphor with each of the 42 will discuss how to use kernels to incorporate the more complex structured feature non-coreferential candidates Based on the training instances, a binary classifier is generated ... approach 3.1 Feature Space As with many other learning -based approaches, the knowledge for the reference determination is represented as a set of features associated with the training or test instances ... maximum-entropybased Charniak parser (Charniak, 2000), based on which the structured features were computed automatically For learning, the SVM-Light software (Joachims, 1999) was employed with the...
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Tài liệu Báo cáo Y học: Prediction of protein–protein interaction sites in heterocomplexes with neural networks ppt
... probable regions of interaction, in agreement with the contacts with GrpE and the results obtained from experiments with mutants The contact regions predicted with our method and the implicit model ... (co-crystallised with the Dnak Nt-domain) are shown in red colour with thick backbone The DnaJ conserved HPD motif is shown in yellow database are falsely predicted to be in contact with a reliability ... over the whole data set, reaches 0.73 with a correlation coefficient (C) of 0.43 This is a relevant achievement if we compare this efficiency with that obtained with a random predictor (in this case...
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Tài liệu Báo cáo khoa học: "Extending the Entity-based Coherence Model with Multiple Ranks" pot
... in 316 their paper described their approach to extending pairwise rankings to longer rankings, by supplying the learner with rankings of all renderings as computed by Kendall’s τ, which is one ... and permutation generation 5.1.1 Rank Assignment In our multiple-rank model, pairwise rankings between a source document and its permutations are extended into a longer ranking with multiple ranks ... to form a full ranking for the set of permutations generated from the same source document Since a full ranking might be too sensitive to noise in training, we also experiment with the stratified...
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Báo cáo khoa học: "Entailment-based Text Exploration with Application to the Health-care Domain" pot
... a subgraph of the entailment graph that contains all propositional templates (graph nodes) with which this term appears as an argument in the extracted propositions (see Figure 2) This subgraph ... moving from standard concept -based exploration to proposition -based exploration Our model combines the textual entailment paradigm within the exploration process, with application to the health-care ... one of the entailment graph nodes (e.g., ‘associate X with asthma’) At each exploration step, the user can drill down to a more specific template or drill up to a 82 more general template, by moving...
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Báo cáo khoa học: "Experiments in Graph-based Semi-Supervised Learning Methods for Class-Instance Acquisition" docx
... outline future work in Section Graph- based SSL We now review the three graph- based SSL algorithms for class inference over graphs that we have evaluated 2.1 Notation All the algorithms compute a soft ... with seeds per class outperforms LP-ZGL and adsorption even with 10 seeds per class 3.3 TextRunner Graph with WordNet Classes TextRunner Graph, 170 WordNet Classes 3.2 0.35 Freebase-2 Graph with ... TextRunner Graph YAGO Graph TextRunner + YAGO Graph Mean Reciprocal Rank (MRR) Mean Reciprocal Rank (MRR) 0.38 0.28 0.23 0.18 LP-ZGL Adsorption TextRunner Graph YAGO Graph TextRunner + YAGO Graph...
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Báo cáo khoa học: "Integrating Graph-Based and Transition-Based Dependency Parsers" docx
... their implementations 2.2 Graph- Based Models Graph- based dependency parsers parameterize a model over smaller substructures in order to search the space of valid dependency graphs and produce the ... transition -based models and one graph- based model for unlabeled dependency parsing, evaluated on data from the Penn Treebank The combined parsing model is essentially an instance of the graph- based ... differences in the distribution of errors associated with the two models In this paper, we consider a simple way of integrating graph- based and transition -based models in order to exploit their complementary...
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Báo cáo khoa học: "Boosting-based parse reranking with subtree features" docx
... more general than feature templates since it can use the all-subtrees representation without loss of efficiency RankBoost with subtree features A simple question related to kernel -based parse reranking ... algorithm and is used in (Collins, 2000; based reranking algorithm based on the all-subtrees representation First, we describe the architecture of Collins, 2002) our reranking method Second, we show a ... reported a higher F-measure with a generalized winnow using additional linguistic features The accuracy of our model is very similar to that of (Zhang et al., 2002) without using such additional...
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Developer''''s Guide to Building XML-based Web Services with the Java 2 Platform, Enterprise Edition (J2EE) pptx
... XML -based web services They can leverage existing J2EE technologies to build a complete and fully interoperable web service that complies with XML standards Without radical reengineering, and without ... documents without Developer's Guide to Building XML -based Web Services with the Java Enterprise Edition © 2001 The Middleware Company · http://www.middleware-company.com Page interacting with the ... transport such as HTTP, HTTPS, or SMTP) within the element • The endpoint for the service (a URL) within the element WSDL is often mentioned along with UDDI, as the format of technical...
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Báo cáo khoa học: Antibody-based proteomics Analysis of signaling networks using reverse protein arrays pdf
... profiling with gene arrays has provided insight into the expression levels for genes in a variety of normal and diseased tissue specimens However, gene transcript levels not necessarily correlate with ... remains always within the linear part of the binding curve, see above) and in duplicate Each array is probed with a single antibody Each spot will have a volume of around 0.5 nL (with a diameter ... (inkjet technology), with a spotting capacity of about 360 arrays (enabling probing with 360 antibodies) in one overnight spotting run After printing, the chips are blocked with albumin (as done...
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Báo cáo khoa học: "Ranking Algorithms for Named–Entity Extraction: Boosting and the Voted Perceptron" pdf
... last word beginning with a lower case letter, upper case letter, or digit within the quotation marks The first set of feature templates tracks the values of for the words within quotes:2 The next ... segmentation Then the WE feature described in the previous section can be generated by the template ~ } { y w zn|zxv $ % " q Ranking Algorithms Notation ¡ · à ả ả $% " #àĂ8x$Ă70z " $ $ s %31s ... assigns a ranking to different candidate structures for the same sentence, · This section introduces notation for the reranking task The framework is derived by the transformation from ranking...
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