Phân lập đoạn gen CP từ soybean mosaic virus và phát triển vector chuyển gen mang cấu trúc RNAi phục vụ tạo cây chuyển gen kháng bệnh

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Phân lập đoạn gen CP từ soybean mosaic virus và phát triển vector chuyển gen mang cấu trúc RNAi phục vụ tạo cây chuyển gen kháng bệnh

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B GIO DC V O TO I HC THI NGUYấN Lề TH MAI THU PHÂN LậP ĐOạN GEN CP Từ SOYBEAN MOSAIC VIRUS Và PHáT TRIểN VECTOR CHUYểN GEN MANG CấU TRúC RNAi PHụC Vụ TạO CÂY ĐậU TƯƠNG CHUYểN GEN KHáNG BệNH Chuyờn ngnh: Di truyn hc Mó s: 62 42 01 21 LUN N TIN S SINH HC Ngi hng dn khoa hc: GS.TS Chu Hong Mu PGS.TS Chu Hong H THI NGUYấN - 2014 S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ i LI CAM OAN Tụi xin cam oan õy l cụng trỡnh nghiờn cu ca tụi Cỏc kt qu trỡnh by lun ỏn l trung thc, mt phn ó c cụng b trờn cỏc Tp khoa hc vi s ng ý v cho phộp ca cỏc ng tỏc gi, phn cũn li cha c cụng b bt k cụng trỡnh no khỏc Tỏc gi S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ ii LI CM N Tụi xin by t lũng bit n ti GS.TS Chu Hong Mu, PGS.TS Chu Hong H ó tn tỡnh hng dn, to iu kin thun li cho tụi sut quỏ trỡnh hc tp, nghiờn cu v hon thnh lun ỏn Tụi xin cm n Phũng Thớ nghim trng im Cụng ngh gen, cm n TS Lờ Vn Sn cựng ton th cỏn b , Phũng Cụng ngh t bo thc vt thuc Vin Cụng ngh Sinh hc ó tn tỡnh giỳp , truyn t nhng kinh nghim quý bỏu cho tụi quỏ trỡnh nghiờn cu v thc hin ti lun ỏn Xin cm n s giỳp ThS , ThS Tụi xin chõn thnh cm n PGS.TS Nguyn Th Tõm cựng th cỏn b B mụn Di truyn & Sinh hc hin i ó giỳp , to iu kin thun li cho tụi sut quỏ trỡnh hc v nghiờn cu ti lun ỏn Tụi xin cm n cỏc thy cụ Khoa Sinh-K thut nụng nghip v B phn qun lý nghiờn cu sinh, Phũng o to, trng i hc S phm i hc Thỏi Nguyờn, xin cm n Lónh o trng i hc S phm v Lónh o i hc Thỏi Nguyờn Tụi xin cm n s giỳp v to iu kin ca Ban ch nhim khoa Sinh Tụi xin cm n gia ỡnh v bn bố ó luụn ng viờn, giỳp tụi sut quỏ trỡnh hc v thc hin thnh cụng lun ỏn ny Nghiờn cu sinh Mai Thu S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ iii MC LC Trang Li cam oan i Li cm n ii Mc lc iii vi viii x M U 1 t Mc tiờu nghiờn cu . Ni dung nghiờn cu Nhng úng gúp mi ca lun ỏn í ngha khoa hc v thc tin Chng TNG QUAN TI LIU 1.1 BNH KHM DO VIRUS CY U TNG . nh virus cõy u tng 1.1.2 S xõm nhp ca SMV v BYMV vo t bo u tng . 1.1.3 H gen ca SMV v BYMV . 10 1.2 NGHIấN CU CHUYN GEN CY U TNG 16 1.2.1 16 1.1.1 1.2.2 nh hng ng dng v mt s thnh tu v chuyn gen cõy u tng S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ 23 iv 1.2.3 Tỡnh hỡnh nghiờn cu to cõy u tng bin i gen Vit Nam 28 1.3 K THUT RNAi TRONG TO CY CHUYN GEN KHNG VIRUS 29 1.3.1 Cỏc c ch RNAi c ch gen thc vt 30 1.3.2 ng dng k thut RNAi nghiờn cu to cõy chuyn gen khỏng virus 36 Chng VT LIU V PHNG PHP NGHIấN CU . 40 2.1 VT LIU, THIT B, HểA CHT V A IM NGHIấN CU 40 2.1.1 Vt liu thc vt 40 2.1.2 Vector v chng vi khun . 42 2.1.3 Húa cht v thit b 42 2.1.4 a im nghiờn cu . 42 2.2 PHNG PHP NGHIấN CU . 43 2.2.1 Nhúm cỏc phng phỏp phõn lp gen 43 2.2.2 Nhúm cỏc phng phỏp thit k vector chuyn gen mang cu trỳc RNAi 48 2.2.3 Phng phỏp chuyn gen thụng qua A tumefaciens 52 2.3.4 Nhúm cỏc phng phỏp phõn tớch cõy chuyn gen 58 Chng KT QU NGHIấN CU V THO LUN 60 3.1 TCH DềNG V PHN TCH TRèNH T ON GEN CP CA SMV 60 3.1.1 Tỏch dũng v xỏc nh trỡnh t nucleotide on gen CP t SMV. 60 3.1.2 Phõn tớch s a dng ca trỡnh t gen CP ca cỏc dũng SMV 67 S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ v 3.2 THIT K VECTOR CHUYN GEN MANG CU TRC RNAi 74 3.2.1 Thit k vector chuyn gen mang cu trỳc RNAi khỏng n loi SMV 74 3.2.2 Thit k vector chuyn gen mang cu trỳc RNAi khỏng hai loi SMV v BYMV 81 3.3 KT QU TO CY THUC L CHUYN GEN KHNG SMV V BYMV 89 3.3.1 Kt qu chuyn cu trỳc CPi (SMV-BYMV) vo cõy thuc lỏ 89 . 92 RNAi 96 96 3.4 K ut cỏc dũng cõy u - 99 KT LUN V NGH . 106 KT LUN 106 NGH . 107 108 TI LIU THAM KHO 109 S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ vi DANH MC CH VIT TT A tumefaciens Agrobacterium tumefaciens AS Acetosyrigone BAP 6-benzyladenine purin BGM Bean golden mosaic virus bp Base pair BYMV Bean yellow mosaic virus CCM Co-cultivation medium CAMV Cauliflower mosaic virus CMV Cucumber mosaic virus ) CP ) ) CPi SMV on bo th c thit k t gen CP ca SMV CPi(SMV-BYMV) on bo th c thit k t gen CP ca c SMV v BYMV DNA Deoxyribo nucleic acid dNTP Deoxynucleoside triphosphate tg ng tỏc gi E coli Escherichia coli EDTA Ethylene diamine tetraacetic acid GA3 Gibberellic acid GM Germination medium (mụi trng ny mm) gus Gen mó húa enzyme -Glucuronidase IAA Indoleacetic acid IBA Indole-3-butyric acid kb Kilo base LB Luria and Bertani S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ vii MS Murashige & Skoog (1962) -Mụi trng c bn NAA -Naphthaleneacetic acid nptII Neomycin phosphotransferase gene OD Optical density Mt quang PCR Polymerase Chain Reaction Phn ng chui Polymerase PPT Phosphinothricin PRSV Papaya ringspot virus pK7GW-CPi-SMV: Vector chuyn gen mang cu trỳc CPi-SMV pK7GW-CPi (SMV-BYMV) Vector chuyn gen mang cu trỳc CPi (SMVBYMV) RM Rooting medium (mụi trng r) RNAi RNA interference SDS Sodium dodecylsulfat SEM Shoot elongation medium (mụi trng kộo di chi) SIM Shoot induction medium (mụi trng to chi) SL1 SMV dũng Sn La - Vit Nam SL2 SMV dũng Sn La - Vit Nam SMV Soybean mosaic virus Taq Thermus aquaticus T-DNA Vựng DNA plasmid chuyn vo thc vt Ti- plasmid Plasmid to u TMV Tobacco mosaic virus TYLCV Tomato yellow leaf curl virus v/p vũng/phỳt Vir Virulence Region X-gluc 5-bromo-4-chloro-3-indolyl glucuronide YEP Yeast extract peptone S húa bi Trung tõm Hc liu ) ) http://www.lrc-tnu.edu.vn/ viii DANH MC BNG Trang Bng 1.1 2014 Bng 2.1 Thnh phn phn ng tng hp cDNA 45 Bng 2.2 Thnh phn phn ng PCR 46 Bng 2.3 Thnh phn phn ng ghộp ni gen vo vector pBT 47 Bng 2.4 Thnh phn phn ng ghộp ni gen vo vector pENTRTM/D-TOPO 50 Bng 2.5 Thnh phn phn ng LR 51 Bng 2.6 Thnh phn phn ng ct bng enzyme hn ch 52 Bng 2.7 Thnh phn cỏc loi mụi trng tỏi sinh in vitro 53 Bng 2.8 Thnh phn dung dch m tỏch DNA tng s 58 Bng 3.1 Trỡnh t cp mi PCR thit k s dng nhõn bn on gen CP 60 Bng 3.2 Cỏc v trớ sai khỏc gia trỡnh t on gen CP ca SMV dũng SL2 so vi dũng SL1 v trỡnh t cú mó s X63771 65 Bng 3.3 Cỏc v trớ sai khỏc gia trỡnh t amino acid ca protein suy din dũng SL2 so vi dũng SL1 v trỡnh t cú mó s CAA45307 66 Bng 3.4 Ngõn hng gen quc t ng phõn tớch S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ 68 ix Bng 3.5 69 Bng 3.6 Trỡnh t cp mi SMV-CPi-Fi/SMV-CPi-Ri 76 Bng 3.7 Trỡnh t cp mi SMV-CPi-Fi/BYMV-CPi-Ri 83 Bng 3.8 Kt qu bin np cu trỳc CPi (SMV-BYMV) vo mnh lỏ thuc lỏ C9-1 91 gen 95 Bng 3.9 Bng 3.10 Kt qu bin np cu trỳc 2008 S húa bi Trung tõm Hc liu http://www.lrc-tnu.edu.vn/ 99 112 28 Afanasiev M M., Morris H E (1952), Bean Virus (yellow) on Great Northern bean in Montana, Phytopathology, 42, pp 101-104 29 Ambros V., Bartel B., Bartel D P., Burge, C B., Carrington J C., Chen X., Dreyfuss G., Eddy S R., Griffiths J.S., Marshall M (2003), A uniform system for microRNA annotation, RNA 9, pp 277 - 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Nghiên cứu thu thập thông tin về gen liên quan đến đặc tính, tính trạng quan tâm và phân lập gen; (ii) Thiết kế vector chuyển gen; (iii) Tạo vi khuẩn mang cấu trúc gen chuyển; (iv) Lây nhiễm vào mô tế bào thực vật; (v) Chọn lọc các thể biến nạp và tái sinh cây biến nạp; (vi) Phân tích cây chuyển gen Agrobacterium là loài vi khuẩn đất Gram âm gây bệnh khối u ở thực vật và có khả năng lây nhiễm một cách... 4.1 Đoạn gen CP đƣợc phân lập từ SMV dòng SL1 và S nucleotide, 720 240 amino acid Hai trình tự đoạn gen CP của SMV đã đƣợc đăng ký trên Ngân hàng gen quốc tế với mã số HG965102, HG965103 4.2 Phát triển mang cấu trúc Số hóa bởi Trung tâm Học liệu http://www.lrc-tnu.edu.vn/ 4 19 RNAi DT2008, thu 5 n gen 12 19 2008 5 Ý nghĩa khoa học và thực tiễn 5.1 Về khoa học Việc phát triển thành công vector chuyển. .. đƣợc cây đậu tƣơng chuyển gen mang cấu trúc RNAi Số hóa bởi Trung tâm Học liệu http://www.lrc-tnu.edu.vn/ 3 3 Nội dung nghiên cứu (1) Nghiên cứ (2) Nghiên cứu phát triển vector gen CPi của hai loài SMV và BYMV bằng kỹ thuật Gateway CPi đã thiết kế vào A tumefaciens (3) Nghiên cứu b Phân tích sự có CPi (4) Nghiên cứu thử nghiệm ch u tƣơng thông RNAi qua A tumefaciens CPi trên cây đậu tƣơng chuyển gen. .. mosaic virus – SMV), virus gây bệnh khảm vàng hại đậu đỗ (Bean yellow mosaic virus – BYMV) và một số virus gây bệnh khác Trong đó, SMV và BYMV là những loại virus gây bệnh khảm nhất đến cây đậu tƣơng SMV và BYMV đƣợc lây nhiễm từ cây bệnh sang cây khoẻ do rệp là môi giới virus có thể truyền qua hạt Khi cây đậu tƣơng bị bệnh, lá cây có những phần xanh nhạt, đậm và biến vàng xen kẽ, lá non ở ngọn bị biến dạng,... gợi ý sự cần thiết và kinh nghiệm tổ chức và quản lý chặt chẽ quá trình nghiên cứu chuyển gen ở đậu tƣơng ở các quốc gia trên thế giới, trong đó có Việt Nam 1.2.1.3 Phân tích cây đậu tương chuyển gen Kỹ thuật chuyển gen ở thực vật nói chung và chuyển gen ở cây đậu tƣơng nói riêng đƣợc hiểu đẩy đủ là: (i) gen ngoại lai (gen chuyển) phải đƣợc hợp nhất vào hệ gen tế bào chủ; (ii) gen chuyển phải đƣợc biểu

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