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Study on production of biosurfactant by strain pseudomonas using crude oil as sole carbon source

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VIETNAM NATIONAL UNIVERSITY OF AGRICULTURE FACULTY OF BIOTECHNOLOGY GRADUATION THESIS STUDY ON PRODUCTION OF BIOSURFACTANT BY STRAIN Pseudomonas USING CRUDE OIL AS SOLE CARBON SOURCE HANOI - 2022 VIETNAM NATIONAL UNIVERSITY OF AGRICULTURE FACULTY OF BIOTECHNOLOGY GRADUATION THESIS STUDY ON PRODUCTION OF BIOSURFACTANT BY STRAIN Pseudomonas USING CRUDE OIL AS SOLE CARBON SOURCE STUDENT : LE VIET HUNG STUDENT’S CODE : 620391 CLASS : K62CNSHE SUPERVISOR : DR KIEU THI QUYNH HOA ASSOC PROF NGUYEN VAN GIANG HANOI – 2022 COMMITMENT I hereby declare that this is my research and completion, the research results presented in the thesis are honest, and objective, and have never been used to present any subject project I hereby declare that all help in the preparation of this thesis has been thanked, and the sources of information cited in this thesis have been acknowledged Hanoi, May 2022 Sincerely Le Viet Hung i ACKNOWLEDGMENTS First of all, with deep gratitude, I would like to thank Dr Kieu Thi Quynh Hoa, Department of Petroleum Microbiology, Institute of Biotechnology (IBT), Vietnam Academy of Science and Technology (VAST), and Assoc Prof Nguyen Van Giang, Department of Microbial Biotechnology, Vietnam National University of Agriculture (VNUA) are the person who oriented, guided, and at the same time, helped and created the best conditions to help me complete this thesis I would like to express my sincere thanks to the staff of the Department of Petroleum Microbiology, IBT, VAST for their enthusiastic support and guidance during the experiment to complete the experiment into a thesis At the same time, I would like to thank the teachers of the Department of Microbial Biotechnology, VNUA for imparting valuable knowledge and passion for scientific research Finally, I would like to sincerely thank my family and friends who have always accompanied, cared for, and encouraged me throughout the whole process of studying, researching, and completing the thesis Hanoi, May 2022 Sincerely Le Viet Hung ii INDEX COMMITMENT i ACKNOWLEDGMENTS .ii INDEX iii LIST OF ABBREVIATIONS vi LIST OF TABLES vii LIST OF FIGURES viii ABSTRACT x PART I INTRODUCTION 1.1 Preface 1.2 Purpose and requirements: 1.2.1 Purpose 1.2.2 Requirements PART II LITERATURE REVIEW 2.1 Petroleum hydrocarbon contamination (PHC) 2.1.1 Petroleum hydrocarbon contamination in the world 2.1.2 Petroleum hydrocarbon contamination in Vietnam 2.1.3 Effects of oil pollution on ecosystems and people 2.1.4 Mechanism of microbial biodegradation of petroleum hydrocarbons 2.1.5 Methods applied for treatment of petroleum hydrocarbon contaminants 2.2 Biosurfactants 10 2.2.1 Classification of biosurfactants 10 2.2.2 Characterization of biosurfactants 11 2.3 Biosurfactants from microorganisms and their applications 12 2.3.1 Microbial production of biosurfactants 12 2.3.2 Effect of environmental factors on production of biosurfactants 14 2.3.3 The potential application of biosurfactants 16 2.4 Study on biosurfactant producing microorganisms for petroleum hydrocarbon biodegradation 17 iii 2.4.1 In the world 17 2.4.2 In Vietnam 18 2.5 Application of Pseudomonas in petroleum hydrocarbon pollution treatment 19 PART III: MATERIALS AND METHODS 20 3.1 Materials 20 3.1.1 Bacterial strain 20 3.1.2 Crude Oil 20 3.1.3 Culture media 20 3.1.4 Machines and equipments 20 3.2 Research methods 21 3.2.1 Isolation of bacteria using petroleum hydrocarbon as sole carbon source 21 3.2.2 Selection of a bacterial strain capable of biosurfactant production with high emulsification activity on petroleum hydrocarbon substrate (crude oil) 22 3.2.3 Identification of the selected bacterial strain 22 3.2.4 Effect of environmental and culture conditions on biosurfactant production of the selected bacterial strain 24 3.2.5 Determination of total oil content by gravimetric method 24 PART IV: RESULTS 25 4.1 Screening of petroleum hydrocarbon (crude oil) utilizing and bio-surfactant producing bacterial strains 25 4.2 Identification of the selected petroleum hydrocarbon utilizing and biosurfactant producing bacterial strain 25 4.2.1 Morphological characteristics of the DSVK2 strain 25 4.2.2 Classification of the DSVK2 strain by 16S rRNA gene sequence analysis 27 4.2.3 The biosurfactants producing ability on crude oil of the selected bacterial strain 27 iv 4.3 Effect of environmental and culture conditions on biosurfactant production efficiency of DSVK2 strain 28 4.3.1 Effect of crude oil concentration on biosurfactant production efficiency of DSVK2 strain 28 4.3.2 Effect of nitrogen sources on biosurfactant production efficiency of DSVK2 strain 31 4.3.3 Effect of different concentrations of NH4NO3 on biosurfactant production efficiency of DSVK2 strain 33 4.3.4 Effect of pH value on biosurfactant production efficiency of DSVK2 strain 35 4.3.5 Effect of temperature on biosurfactant production efficiency of DSVK2 strain 37 4.3.6 Effect of concentrations of NaCl on biosurfactant production efficiency of DSVK2 strain 39 4.3.7 Effect of bacterial concentrations on biosurfactant production efficiency of DSVK2 strain 41 4.3.8 Biodegradation of crude oil of Pseudomonas sp DSVK2 43 PART V DISCUSSION 45 PART VI: CONCLUSIONS 49 REFERENCES 50 v LIST OF ABBREVIATIONS Abbreviations Explain APG Alkyl polyglycoside BS Biosurfactants CLP Cyclic Lipopeptide E24 Emulsifying index after 24 hours HC Hydrocarbons IBT Institute of Biotechnology MSM Mineral salt medium PAHs Polycyclic aromatic hydrocarbons PHC Petroleum Hydrocarbon Contamination SEM Scanning electron microscope ST Surface tension TABM Total aerobic bacteria medium TPH Total petroleum hydrocarbon VAST Vietnam Academy of Science and Technology VNUA Vietnam National University of Agriculture vi LIST OF TABLES Table 2.1 Large oil spill in the world .4 Table 2.2 Large oil spill in Vietnam .5 Table 2.3 Classification of biosurfactants by microorganisms 11 Table 2.4 Microorganisms capable of biosurfactant production 13 Table 3.1 Equipment used for research 21 vii LIST OF FIGURES Figure 2.1 Mechanism of biodegradation petroleum Figure 4.1 Colony morphology of DSVK2 strain on TABM 26 Figure 4.2 Image of DSVK2 strain under scanning electron microscope 26 Figure 4.3 Biosurfactant of DSVK2 strain during 18 days of incubation 28 Figure 4.4 Biosurfactant production efficiency of DSVK2 during 18 days 28 Figure 4.5 Biosurfactant production of DSVK2 strain at different concentrations of crude oil after 12 days incubation 30 Figure 4.6 Biosurfactant producing of DSVK2 strain with different crude oil content after 12 days incubation 30 Figure 4.7 Biosurfactant producing of DSVK2 strain with different nitrogen sources after 12 days incubation 32 Figure 4.8 Biosurfactant ability of strain DSVK2 with different nitrogen sources after 12 days 32 Figure 4.9 Biosurfactant production of DSVK2 strain at different concentrations of NH4NO3 after 12 days incubation 34 Figure 4.10 Biosurfactant production efficiency of DSVK2 strain with different concentrations of NH4NO3 after 12 days 34 Figure 4.11 Biosurfactant of DSVK2 strain at different pH values after 12 days 36 Figure 4.12 Biosurfactant production efficiency of DSVK2 strain with different pH values after 12 days 36 Figure 4.13 Biosurfactant production of DSVK2 strain at different temperatures after 12 days incubation 38 Figure 4.14 Biosurfactant production efficiency of DSVK2 strain with different temperatures after 12 days 38 viii PART V DISCUSSION Biodegradation of hydrocarbons by microorganisms allows for the conversion of hazardous substances into forms that are less or nontoxic Potential of microorganisms to degrade or transform various petroleum hydrocarbons has been investigated One of the most important characteristics of hydrocarbon-degrading bacteria is the ability to emulsify hydrocarbons in solution by producing biosurfactants that cause dispersion of hydrocarbons in water emulsions, microdroplets of micelles which are subsequently transported into the cell The capability of biosurfactants to enhance organic contaminants availability and biodegradation rates were demonstrated Studies revealed that biosurfactants can enhance hydrocarbon bioremediation Biosurfactant can reduce the surface tension and thus enhance the removal of hydrocarbons by increasing their solubility and making them more available for degradation Several microbial genera such as Acinetobacter, Arthrobacter, Pseudomonas, and Myroides Halomonas, Alcanivorax, Rhodococcus and Halomonas have been used in hydrocarbon degradation studies (Sarshad et al., 2015; Kadam et al., 2019) In which, Pseudomonas which can grow in extreme environmental conditions shows potential for application of hydrocarbon degradation Therefore, the aim of this study is to select a crude oil utilizing Pseudomonas strain for the potential to produce biosurfactant A Pseudomonas strain DSVK2 that has been a potential biosurfactant producing on crude oil as the sole carbon source with 52.8% of emulsification index (E24) isolated from oil-contaminated water at Do Son, Hai Phong, Vietnam This is positive results that have been compared with to the findings of some studies (Kadam et al., 2019; Antai 1990; Thavasi et al., 2007) Based on morphological, biochemical characteristics and sequencing analysis of 16S rDNA, the strain DSVK2 was identified belong to Pseudomonas genera and similarity up to 99.5% with Pseudomonas stutzeri Therefore, the strain DSVK2 45 was designed as Pseudomonas stutzeri DSVK2 In addition, many species belong to genus Pseudomonas were reported for their biosurfactant activities (EI Mahdi et al., 2016; Thavasi et al., 2011; Liu et al., 2018) Despite all advantages mentioned above, only a few microbial species are produced at large scale for commercial applications, mainly due to their ability of biosurfactant production Therefore, aiming at the further use of the Pseudomonas sp DSVK2 strain in hydrocarbon bioremediation, the biosurfactant production yields must be improved which can be achieved through the optimization of culture medium and conditions, specifically of carbon and nitrogen source, pH value, temperature, salinity, and the concentration of inoculated bacteria In this study, the emulsification of Pseudomonas sp DSVK2 were examined under a variety of conditions, such as the choice of crude oil as the sole carbon source, nitrogen source for energy requirements, and the effect of different environmental conditions like salinity (concentration of NaCl), pH value and temperature Because this strain was isolated in the environment containing rich hydrocarbon components in crude oil it leads to an especially important assessment of the crude oil concentration As mentioned earlier, the effects of crude oil are noticeably clear, it is the ideal source of nutrition for the strain DSVK2 From six different concentrations of crude oil, the concentration of 3% (w/v) crude oil was found to be favorable for this strain (E24 is 56 %) We found this result to be a bright spot like other study that have also reported the same (Zhang et al., 2012) In nature as well as in chemistry, there are many different nitrogen sources, however, for each strain of microorganisms there are diverse way to utilize nitrogen sources In our study, Pseudomonas sp DSVK2 recognized tends to use ammonium nitrate (NH4NO3) as the best nitrogen source to increase biosurfactant production through of emulsification index E24 reached 60.5 % This result is like an analysis of strains of Pseudomonas 46 fluorescens of (Abouseoud et al., 2008, Saikia et al., 2012) At the same time, there are many concentrations of ammonium nitrate that also affect the ability of biosurfactants production, in a variety of NH4NO3 concentrations, we determined that 0.4% (w/v) was the most optimal nitrogen concentration for the emulsification formation of Pseudomonas stutzeri DSVK2 (E24: 64%) Furthermore, current attention is focusing on biosurfactant-producing bacteria under extreme conditions for commercial utilization and usefulness Therefore, this study has simulated the growth of Pseudomonas stutzeri DSVK2 in different environment conditions, the change of each condition will directly affect the efficiency of biosurfactant production and petroleum hydrocarbon biodegradation process In the final, we optimized the culture medium under pH 8.0, culture temperature 30oC, and NaCl concentration reached 2% (w/v) Under these optimal conditions, the desirable emulsification index reached 66% This fact may be related to the conditions in marine environments with pH (7-8.5), salt ranges from 30% with NaCl is a main element of seawater and the temperature fluctuates greatly Our finding could be comparable with the results of (Harikrishnan, 2021), they observed that the E 24 of Pseudomonas stutzeri biosurfactant activity was stable in pH range from to 10, and stable at pH 7.5, they also stated that temperatures at 30-37°C resulted in a optimize yield of biosurfactant production by Pseudomonas stutzeri SJ3 In biodegradation results, analysis on crude oil decomposition showed Pseudomonas stutzeri has 63% biodegradation efficiency of crude oil after 20 days of incubation Recently, Rehmanet et al (2021 reported crude oil degradation by Pseudomonas aeruginosa and Meyerozyma sp in the range of 91% and 87% degradation rates On other hand, (Deivakumari et al., 2020) announced petroleum hydrocarbon biodegradation by Pseudomonas aeruginosa (DKB1) in the range of 63.38% over 60 days The present study demonstrates that the Pseudomonas stutzeri capable to producing biosurfactant which possesses an efficient crude oil degradation property and is potentially useful 47 for biodegradation of petroleum hydrocarbon contaminated sites The application of DSVK2 in the treatment of petroleum hydrocarbon contamination will be further studied and announced in a suitable time 48 PART VI: CONCLUSIONS Based on the screening methods, a bacterial strain (designed as DSVK2) was isolated from oil-contaminated water at Do Son, Hai Phong This strain has the ability to utilize crude oil as the sole carbon source and produce biosurfactant on this substrate with an E24 index of 52.8% after 12 days of incubation DSVK2 strain was identified through morphological characteristics and sequencing analysis of 16S rDNA This strain is similar to 99.5 % with the 16S rDNA sequence of Pseudomonas stuzeri, therefore was designed as Pseudomonas sp DSVK2 The suitable culture conditions for biosurfactant production of Pseudomonas sp DSVK2 are 3% (w/v) crude oil, 0.4% (w/v) NH4NO3, 2% (w/v) NaCl, 3% (v/v) bacterial concentration, pH 8, 30 oC Under these conditions, the biosurfactant produced by this strain was the highest with E24 reaching 69%, an increase of ~16.2% compared to the E24 before selecting the suitable factors (52.8%) The strain Pseudomonas sp DSVK2 showed quite a high degradation efficiency (63%) after 20 day-experiment in the suitable conditions The crude oil content decreased from 28,950 to 10,712 mg/l after 20 day-experiment These effective biosurfactant-producing bacteria represent a promising option for many applications aimed at the biodegradation of hydrocarbon and bioremediation of petroleum hydrocarbon contaminated sites that has the ability of petroleum hydrocarbon utilization and bio-surfactant production 49 REFERENCES Vietnamese Đặng Thị Yến, Nguyễn Thành Bình, Nguyễn Thị Yên, Vương Thị Nga, Kiều Thị Quỳnh Hoa (2018) Nghiên cứu chủng vi khuẩn sinh tổng hợp chất hoạt động bề mặt sinh học nguồn chất dầu thô nhằm ứng dụng cơng nghiệp dầu khí xử lý ô nhiễm dầu Hội nghị Khoa học công nghệ sinh học tồn quốc 2018; 1198-1202 Đỗ Cơng Thung cs, 2007, Báo cáo cục hàng hải Việt Nam, 2010 Kiều Thị Quỳnh Hoa cộng (2016, 2017), Khả tạo chất hoạt động bề mặt sinh học phân hủy dầu thô chủng nấm men 1214-BK14 phân lập từ giếng khai thác dầu mỏ Bạch Hổ, Vũng Tàu Tạp chí khoa học 2016, 38(2):179-185 Kiều Thị Quỳnh Hoa, Nguyễn Vũ Giang, Nguyễn Thị Yên, Mau Đức Huynh, 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