Xác định các gen-alen đặc thù liên quan đến sự phát triển bộ rễ của các giống lúa Việt Nam

Xác định các gen-alen đặc thù liên quan đến sự phát triển bộ rễ của các giống lúa Việt Nam

HỌC VIỆN NÔNG NGHIỆP VIỆT NAM PHÙNG THỊ PHƯƠNG NHUNG XÁC ĐỊNH CÁC GEN - ALEN ĐẶC THÙ LIÊN QUAN ĐẾN SỰ PHÁT TRIỂN BỘ RỄ CỦA CÁC GIỐNG LÚA VIỆT NAM LU N ỄN TI N Sƾ NHÀ XU T B N H C VI N NỌNG NGHI P - 2019 H C VIỆN NÔNG NGHIỆP VIỆT NAM PHÙNG TH PH NG NHUNG XÁC ĐỊNH CÁC GEN - ALEN ĐẶC THÙ LIÊN QUAN ĐẾN SỰ PHÁT TRIỂN BỘ RỄ CỦA CÁC GIỐNG LÚA VIỆT NAM Chuyên ngành: Mã số: Di truyền Chọn giống trồng 62 01 11 Người hướng dẫn khoa học: GS.TS Đỗ Năng Vịnh GS.TS Pascal Gantet NHÀ XU T B N H C VI N NỌNG NGHI P - 2019 L I CAM ĐOAN Tơi xin cam đoan đơy lƠ cơng trình nghiên c u c a tôi, kết qu nghiên c u đ ợc trình bƠy luận án lƠ trung thực, khách quan vƠ ch a đ ợc sử dụng để b o v b t kỳ h c v nƠo Tôi xin cam đoan m i giúp đỡ cho vi c thực hi n luận án đƣ đ ợc cám n, thơng tin trích dẫn luận án nƠy đ ợc ghi rõ nguồn gốc Hà Nội, ngày tháng năm 2019 Tác gi lu n án Phùng Th Ph i ng Nhung L IC M N Tác gi luận án xin trơn tr ng c m n: H c Vi n Nông nghi p Vi t Nam, Ban Qu n lý đƠo t o, Khoa Nông h c, Bộ môn Di truyền vƠ Ch n giống cơy trồng, Phịng thí nghi m tr ng điểm Cơng ngh tế bƠo thực vật, Phịng thí nghi m liên kết Vi t – Pháp (LMI – Rice) – Vi n Di truyền Nông nghi p, Trung tơm TƠi nguyên di truyền thực vật (PRC- Vi t Nam), Trung tơm Hợp tác quốc tế nghiên c u vƠ Phát triển nông nghi p bền vững (CIRAD - Pháp), đƣ t o điều ki n thuận lợi cho hoƠn thƠnh luận án nƠy Tôi xin c m n Ch ng trình h c bổng GRiSP – IRRI, Trung tơm Hợp tác quốc tế nghiên c u vƠ Phát triển nông nghi p bền vững (CIRAD - Pháp),Vi n Nghiên c u Phát triển (IRD – Pháp), đề tƠi "Nghiên c u ch c gen quy đ nh phát triển r lúa, phục vụ ch n t o giống lúa ch u h n cơng ngh gen” thuộc "Ch ng trình tr ng điểm phát triển vƠ ng dụng công ngh sinh h c lĩnh vực Nông nghi p vƠ PTNT đến năm 2020” - Bộ Nông nghi p vƠ Phát triển nông thôn Vi t Nam, đƣ tƠi trợ kinh phí cho phần nghiên c u c a tơi Đặc bi t tơi xin bƠy tỏ lịng biết n sơu sắc tới GS.TS Đỗ Năng V nh, GS.TS Pascal Gantet, TS Brigitte Courtois đƣ trực tiếp h ớng dẫn vƠ giúp đỡ tận tình trình h c tập, nghiên c u để hoƠn thƠnh luận án nƠy Tôi xin chơn thƠnh c m n: Các thầy cô, đồng nghi p đƣ quan tơm, giúp đỡ, động viên vƠ đóng góp nhiều ý kiến cho vi c hoƠn thƠnh luận án nƠy; Các cộng tác viên, kỹ thuật viên, t i Phịng thí nghi m tr ng điểm Cơng ngh tế bƠo thực vật, Phịng thí nghi m liên kết Vi t- Pháp, Vi n Di truyền Nông nghi p; Bộ môn Qu n lý Ngơn hƠng gen- Trung tơm TƠi nguyên di truyền thực vật; Phòng Nghiên c u Di truyền – CIRAD – Pháp, đƣ giúp đỡ tơi q trình lƠm thí nghi m vƠ hoƠn thƠnh luận án nƠy; Các thƠnh viên gia đình, b n bè đƣ t o điều ki n vƠ động viên tơi suốt q trình thực hi n luận án nƠy Xin trơn tr ng c m n! Hà Nội, ngày tháng năm 2019 Tác gi lu n án Phùng Th Ph ii ng Nhung M CL C L i cam đoan i L i c m n ii Mục lục iii Danh mục chữ viết tắt vi Danh mục b ng ix Danh mục hình x Trích yếu luận án xii Thesis abstract xiv Ph n M đ u .1 1.1 Tính c p thiết c a đề tƠi 1.2 Mục tiêu nghiên c u c a đề tƠi .3 1.3 Ph m vi nghiên c u 1.4 Những đóng góp c a đề tƠi 1.5 Ý nghĩa khoa h c vƠ thực ti n c a đề tƠi Ph n T ng quan tƠi li u .6 2.1 Vai trò vƠ đặc điểm r 2.1.1 Vai trò c a r lúa .6 cơy lúa 2.1.2 Đặc điểm c u trúc c a r lúa 2.1.3 Đặc điểm phát triển c a r lúa .10 2.2 QTLs vƠ Gen liên quan đến phát triển r lúa 12 2.2.1 Các QTLs liên quan đến phát triển r lúa 12 2.2.2 Các gen liên quan đến hình thƠnh vƠ phát triển r lúa 16 2.3 Nguyên lý vƠ ng dụng c a GBS .24 2.3.1 Ph ng pháp gi i trình tự NGS – t ng c a GBS 24 2.3.2 Nguyên lý c a ph ng pháp GBS 28 2.3.3 Các ng dụng c a GBS ch n giống cơy trồng 33 2.4 Nguyên lý vƠ ng dụng c a GWAS 35 2.4.1 Nguyên lý 35 2.4.2 GWAS lƠ công cụ hữu hi u 36 2.4.3 Các b ớc xơy dựng nghiên c u GWAS 38 2.4.4 Ý nghĩa vƠ tiềm c a GWAS ch n t o giống lúa .42 iii 2.5 Nguồn gen lúa vƠ tình hình nghiên c u r lúa Vi t Nam 44 2.5.1 Nguồn gen lúa Vi t Nam 44 2.5.2 Tình hình nghiên c u đặc điểm r lúa Ph n V t li u vƠ ph Vi t Nam 45 ng pháp nghiên c u 48 3.1 Đ a điểm nghiên c u 48 3.2 Th i gian nghiên c u 48 3.3 Vật li u nghiên c u .49 3.4 Nội dung nghiên c u 49 3.5 Ph ng pháp nghiên c u 51 3.5.1 Chiết tách ADN tổng số 51 3.5.2 Phơn tích đa d ng di truyền ch th DArT 51 3.5.3 Phơn tích kiểu gen thơng qua gi i trình tự (GBS) .54 3.5.4 Phơn tích c u trúc di truyền c a tập đoƠn mẫu giống nghiên c u 54 3.5.5 Xác đ nh m c độ phơn rƣ c a LD (Linkage Disequilibrium) .55 3.5.6 Đánh giá đặc điểm nông sinh h c .56 3.5.7 Ph ng pháp đánh giá kiểu hình r .57 3.5.8 Lập b n đồ liên kết (GWAS) 60 3.5.9 Ph ng pháp xác đ nh gen ng viên 61 Ph n K t qu vƠ th o lu n .62 4.1 Đặc điểm c a s u tập giống lúa .62 4.1.1 Đặc điểm thu đ ợc qua thông tin hồ s mẫu giống 62 4.1.2 Đặc điểm nông sinh h c c b n 63 4.2 Kết qu phơn tích đa d ng di truyền với ch th DArT .68 4.2.1 Kết qu phơn tích đa hình vƠ c u trúc di truyền 68 4.2.2 Xơy dựng cơy phơn lo i cho giống lúa nghiên c u 69 4.3 Kết qu phơn tích kiểu gen thơng qua gi i trình tự (GBS –Genotyping by sequencing) 72 4.3.1 Kết qu phơn tích đa hình vƠ c u trúc di truyền với SNPs marker .72 4.3.2 Đặc điểm c a mẫu giống lúa phơn nhóm khác 75 4.3.3 Kết qu phơn tích Linkage Disequilibrium (LD) 82 4.4 Kết qu đánh giá kiểu hình tính tr ng liên quan đến phát triển r mẫu giống nghiên c u .86 iv 4.4.1 Kết qu phơn tích ph ng sai vƠ thống kê c b n 86 4.4.2 Kết qu phơn tích thƠnh phần 98 4.5 Kết qu phơn tích liên kết toƠn h Gen (GWAS) .101 4.5.1 Các QTLs liên kết với tính tr ng liên quan đến phát triển r 101 4.5.2 Các gen ng viên liên quan đến đặc điểm phát triển r .114 4.5.3 Điểm đặc bi t c a vùng QTLs liên kết với NCR NST số 11 120 Ph n K t lu n vƠ ki n ngh 131 5.1 Kết luận .131 5.2 Kiến ngh 132 Danh sách cơng trình liên quan đến luận án 133 TƠi li u tham kh o 134 Phụ lục 158 v DANH M C CH VI T T T Ch vi t t t ADN Ch vi t đ y đ Deoxyribonucleic acid Ti ng Vi t Axit deoxyribonucleic AFLP Amplified Fragment Length Đa hình độ dƠi đo n nhơn Polymorphism b n ch n l c ANOVA Analysis of Variance Phơn tích ph bp Base pair 1bp = 1cặp nucleotide CH Central Highlands Vùng Tơy Nguyên Chr Chromosome Nhi m sắc thể cM Centimorgan Xen-ti-mooc-gan CRL1 Crown Root Less Đột biến gơy m t r b t đ nh ng sai lúa Discriminant Analysis of Principal Phơn tích phơn bi t thƠnh phần Components DArT Driversity Array Technology Công ngh đa d ng m ng DEPTH Deepest point reached by root Độ ăn sơu c a r DRP Deep Root Propotion Phần trăm khối l ợng khô c a DAPC phần r ăn sơu DRW Deep Root Weight Khối l ợng khô phần r ăn sơu DW0020 Dry Weight of root part in the 00- Khối l ợng khô c a phần r từ 20 cm đến 20 cm Dry Weight of root part in the 20- Khối l ợng khô c a phần r từ 40 cm 20 đến 40 cm Dry Weight of root part in the 40- Khối l ợng khô c a phần r từ 60 cm 40 đến 60 cm Dry Weight of root part Below 60 Khối l ợng khô c a phần r dƠi cm h n 60 cm DW2040 DW4060 DWB60 FYPP Phytochrome associated serine/threonine proteinphosphates GA20oX Gibberelic acid 20 oxidase GBS Genotyping By Sequencing vi Phơn tích kiểu gen thơng qua gi i trình tự GLM General Linear Model Mơ hình hồi quy tuyến tính GWAS Genome-wide Association Studies Nghiên c u lập b n đồ liên kết toƠn h gen IAA Auxin/ indole -3- acetic acid Auxin IR Irrigated Canh tác ch động t ới tiêu kb Kilo base pair 1kb =1000 bp LBD Lateral organ boundary domain LD Linkage Disequilibrium Sự m t liên kết LLGTH Longest Leaf Length Chiều dƠi thơn MAF Minor Allele Frequence Alen có tần số nhỏ h n Mb Megabase pair 1Mb = 1000 kb MIF Mini Zinc Finger MLM Mix Linear Model Mơ hình hồi quy tuyến tính hỗn hợp Đồng sơng Cửu Long MRD Mekong River Delta MRH Morphogenesis of Root Hair MRL Maximum of Root Length Chiều dƠi r tối đa NCC North Central Coast Duyên h i Bắc Trung Bộ NCR Number of Crown Root Số l ợng r b t đ nh NE Northeast Vùng Đông Bắc Bộ NGS Next Generation Sequencing Cơng ngh gi i trình tự h NILs Near Isogenic Lines Dòng đẳng gen NR_T Number of crown roor per Tiller Số r b t đ nh trung bình/nhánh NW Northwest Vùng Tơy Bắc Bộ PCA Principal Component Analysis Phơn tích thƠnh phần PCR Polymerase Chain Reaction Kỹ thuật nhơn b n ADN PDW Plant Dry Weight Khối l ợng khô c a cơy PHP Hypertext Preprocesser PIC Polymorphism Information Content vii HƠm l ợng thơng tin đa hình PIN Pin- formed PIP Plasma membrane Intrinsic Protein PLAT Polycystin-1, Lipoxygenase, Alpha-toxin and Triacylglycerol QHB Quiescent Center homobox QTLs Quantitative Trait Loci Locus tính tr ng số l ợng R_S Root – Shoot ratio Tỷ l khối l ợng khô phần r vƠ phần thơn cơy Radnom Amplified Polymophism Đa hình đo n ADN đ ợc DNA nhơn b n ngẫu nhiên RDW Root Dry Weight Khối l ợng khô c a phần r RFLP Restriction Fragment Length Đa hình độ dƠi đo n cắt giới Polymorphism h n RAPD RID Root Initiation Defective RILs Recombinant Inbred Lines Dòng tái tổ hợp RL Rainfed Lowland Canh tác n ớc tr i RR Response Regulator Yếu tố điểu ch nh ph n ng RRD Red River Delta Đồng chơu thổ sông Hồng SCC South Central Coast Duyên h i Nam Trung Bộ SCR Scarecrow SDW Shoot Dry Weight Khối l ợng khô phần thơn cơy SE Southeast Vùng Đông Nam Bộ SHR Short Root SNP Single Nucleotide Polymorphism SNX Sorting nexin SRP Shallow Root Propotion vùng th p Đa hình nucleotide đ n Phần trăm khối l ợng khô c a phần r ăn nơng SSR Simple Sequence Repeats Đa hình đo n lặp đ n gi n THK Root Thickness Độ dƠy c a r TIL Number of Tiller Số nhánh UP Upland Canh tác n WOX WUCHEL-related viii ng rẫy Ph l c Danh sách 200 gi ng lúa s d ng GBS vƠ thí nghi m ki u hình r KỦ hi u Tên Mƣ s ngơn hƠng gen N i thu m u Lo i gi ng H sinh thái AZ G1 G10 G100 G101 G102 G103 G104 G105 G106 G107 G108 G109 G11 G110 G111 G113 G115 G116 G117 G118 G119 G12 G120 G121 G124 G125 G126 G128 G129 G13 G130 G131 G132 G133 G134 G135 G136 G137 G138 G139 G14 G140 G141 G142 G143 G144 G145 G146 G147 G148 G150 G152 G153 AZUCENA TEP HAI PHONG TAM SON NAM DINH KHAU QUAI DANG DIEO KBIN TZO KOH DANG CU PUA DANG CU PUA DANG NEP THAI LAN NEP HAI HAU NEP THAI BINH LUN TAM AP BE MANH GIE TAM TRON HAI DUONG RAN TRANG NEP RAY NANG THIET KOI LOI KOI PU KHAO SANG L03 L26 TAM CAO VINH PHUC BAY THANH CA RO NEP DEN NEP NUONG KHAU DAM DOI KHAU DAM LC93-2 TAM DEN HAI PHONG LUA DA BO PADAI LONG KHANH PADAI TLIG JUG A 330 PADAI CALOC PADAI DLUC PHUOC LONG NEP NGHE NANG QUAT LUA NANG DEN TAM NHO BAC NINH LUA BAY DANH LUA NANG NIEU CHUM LUA THANH TRA NEP TROI CHO LUA MUA DIA PHUONG BA RIA NANG LOAN HAT TRON LUA NANG LOAN HAT DAI TRANG TEP NEP DIA PHUONG LOC SOM TE NUONG IRGC_328 VNPRC_11 VNPRC_216 VNPRC_6969 VNPRC_7295 VNPRC_7303 VNPRC_7304 VNPRC_7305 VNPRC_7312 VNPRC_7316 VNPRC_7317 VNPRC_7318 VNPRC_7349 VNPRC_219 VNPRC_7823 VNPRC_7824 VNPRC_7827 VNPRC_7910 VNPRC_7913 VNPRC_7930 VNPRC_9175 VNPRC_9198 VNPRC_226 VNPRC_9219 VNPRC_9246 VNPRC_9355 VNPRC_9356 VNPRC_9466 VNPRC_9476 VNPRC_9507 VNPRC_253 VNPRC_9509 VNPRC_9517 VNPRC_9520 VNPRC_9524 VNPRC_9530 VNPRC_9532 VNPRC_9541 VNPRC_9554 VNPRC_9563 VNPRC_9568 VNPRC_318 VNPRC_9570 VNPRC_9573 VNPRC_9574 VNPRC_9576 VNPRC_9578 VNPRC_9580 VNPRC_9584 VNPRC_9585 VNPRC_9588 VNPRC_9595 VNPRC_9871 VNPRC_9874 na HAI PHONG NAM DINH TUYEN QUANG TAY NGUYEN THUA THIEN HUE THUA THIEN HUE THUA THIEN HUE HA GIANG NINH BINH NINH BINH NINH BINH QUANG BINH HAI DUONG BINH THUAN BINH THUAN VUNG TAU na na QUANG TRI na na VINH PHUC CA MAU TAY NINH QUANG NINH QUANG NINH NGHE AN NGHE AN KHANH HOA HAI PHONG KHANH HOA KHANH HOA KHANH HOA KHANH HOA KHANH HOA KHANH HOA KHANH HOA BEN TRE BEN TRE BEN TRE BAC NINH BEN TRE BEN TRE BEN TRE BEN TRE BEN TRE BEN TRE BEN TRE BEN TRE BEN TRE BEN TRE BAC GIANG THANH HOA IMP TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD IMP IMP TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD IMP TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD UP na na UP na na na na na IR IR IR UP na UP UP IR na na UP na na na na IR IR na UP UP UP na UP UP UP IR UP UP UP RL RL RL na RL RL RL RL RL RL RL IR RL IR na UP 172 Nhóm Phơn nhóm J I I I J I J I I J J m I I I I I I I J I I I I I J I J J I I J J I I J J I I I I I I I I I I J I I I I J I J Im I4 J1 J1 Im Jm Im I3 J2 J2 m Im I4 Im Im I2 Im na Jm na Im I4 I2 Im J2 Im J1 J1 Im na J3 J3 Im I1 Jm na Im na Im I2 I4 I2 I2 I2 I2 I2 J1 I2 I2 na I2 J1 I3 KỦ hi u Tên Mƣ s ngơn hƠng gen N i thu m u Lo i gi ng H sinh thái G154 G155 G156 G157 G158 G16 G160 G161 G162 G163 G165 G166 G167 G168 G169 G17 G170 G171 G172 G173 G177 G178 G179 G18 G180 G181 G182 G183 G186 G187 G189 G19 G190 G191 G192 G193 G194 G195 G196 G198 G2 G20 G200 G201 G202 G203 G204 G205 G206 G207 G208 G209 G21 G210 G211 G212 G214 NEP THOM KHAU PE LANH LUA K SO CRIOONG VA TAI ANA ACU NEP VAN RUONG HOA BINH JASMINE BN1 NEANG CON CA CHOCH CHAP GIONG 90 NGAY CHIN TEO THAN NONG MUA OM1490 JASMINE 95 NEP GA GAY HAI DUONG OM 504 JAPAN NEP THAI VND 95-20 TAM THOM TRUNG QUOC CHAM HOM KHAU CHINH PHU BLAO PU LAU NEP QUYT HAI DUONG CA DUNG HAT BLAU PLAN PIENG KHAU MO KHAU PE LANH KHAU NO KHAU DUONG PHUONG KHAU NAM RINH ON PLE PHMA CHUA KHAU TAN KHAU BAO THAI BLE PE XA BLE BLAU LIA BLE BDE BLE CO PON BLE BLAU DA TA CO LAO CAI TE LE HOA BINH CHA FU NU CHA XU PHU LU NONG TO PLAU CA BANH PLE DO BLE BLAU CHO BLE BLAU DO KHAU LUA KHAU BOONG LAM BLE CHO GIE TRANG HOA BINH KHAU LECH PLAU NGOANG PLAC PLAU BULAT BLE BLAU DO VNPRC_9878 VNPRC_9908 VNPRC_9967 VNPRC_9984 VNPRC_12049 VNPRC_384 VNPRC_12059 VNPRC_12066 VNPRC_12068 VNPRC_12071 VNPRC_12083 VNPRC_12086 VNPRC_12088 VNPRC_12101 VNPRC_12102 VNPRC_394 VNPRC_12103 VNPRC_12104 VNPRC_12105 VNPRC_12107 VNPRC_12563 VNPRC_12573 VNPRC_12581 VNPRC_407 VNPRC_12637 VNPRC_12970 VNPRC_13008 VNPRC_13076 VNPRC_13309 VNPRC_13320 VNPRC_13362 VNPRC_509 VNPRC_13363 VNPRC_13422 VNPRC_13423 VNPRC_13424 VNPRC_13425 VNPRC_13426 VNPRC_13427 VNPRC_13429 VNPRC_58 VNPRC_553 VNPRC_13431 VNPRC_13435 VNPRC_13442 VNPRC_14212 VNPRC_14215 VNPRC_14251 VNPRC_14252 VNPRC_14278 VNPRC_14279 VNPRC_14386 VNPRC_614 VNPRC_14408 VNPRC_14587 VNPRC_14589 VNPRC_14596 HA TAY SON LA na SEKONG NINH THUAN HOA BINH AN GIANG AN GIANG AN GIANG AN GIANG KIEN GIANG KIEN GIANG KIEN GIANG KIEN GIANG KIEN GIANG HAI DUONG KIEN GIANG KIEN GIANG KIEN GIANG KIEN GIANG HOA BINH HOA BINH HOA BINH HAI DUONG na SON LA SON LA SON LA SON LA SON LA DIEN BIEN na DIEN BIEN DIEN BIEN DIEN BIEN DIEN BIEN DIEN BIEN DIEN BIEN DIEN BIEN DIEN BIEN LAO CAI HOA BINH LAI CHAU LAI CHAU LAI CHAU DIEN BIEN DIEN BIEN SON LA SON LA SON LA SON LA LAI CHAU HOA BINH LAO CAI LAO CAI LAO CAI LAO CAI TRAD TRAD TRAD TRAD TRAD TRAD IMP IMP TRAD TRAD TRAD TRAD TRAD IMP IMP TRAD IMP TRAD IMP TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD IR UP na na UP na UP IR UP UP RL na RL IR IR na IR IR IR IR na na na na na UP UP UP UP UP UP na UP RL RL UP UP UP UP UP na na UP UP UP UP UP UP UP RL RL UP na UP UP UP RL 173 Nhóm Phơn nhóm J I I J J J I I I I I I I I I I I I I I J J J I I I I I I J I I I J I J J J m J I I J I J J J I J m I I I J I J J J2 I3 Im Jm J3 J2 Im Im I2 Im I1 I2 I2 I1 I1 Im I1 I1 I1 Im J1 J1 J1 I4 I2 I6 I6 Im Im J1 I3 Im Im J2 Im J1 J1 J1 m na Im I4 J1 Im J1 J1 J1 I3 J1 m Im I6 I4 J1 Im J1 Jm KỦ hi u Tên Mƣ s ngơn hƠng gen N i thu m u Lo i gi ng H sinh thái G216 G217 G219 G22 G220 G221 G222 G223 G24 G25 G26 G27 G29 G299 G3 G30 G300 G31 G32 G35 G36 G37 G38 G39 G4 G40 G41 G42 G43 G44 G45 G46 G47 G48 G49 G5 G50 G51 G52 G53 G54 G56 G57 G58 G59 G6 G60 G61 G62 G63 G64 G65 G66 G67 G68 G69 G7 TOM BEO BUA BLE BLAU SOA KHAU LA LANH TRUNG TRANG TUYEN QUANG PLE LA KHAU MAC CO PLE MA MU BLE BLAU TAN TAM XOAN HAI HAU NEP VANG ONG LAC SON HB KHAU CAI NOI DOAN KET NEP CON BLAO SINH SAI AN TU VO DO TIEU CHET NANG QUOT BIEN NANG CHI NANG DUM SANAKI NANG TAY NEP CAM NEP NUONG NEP CAM NHONG DO HAI DUONG NEP DO LUA DO LUA HON COI THANH TUA MOT BUI NEP CUC NEP BA LAO NEP ONG LAO LUA NGOI DT10 NHONG TRANG HAI PHONG LUA NEP BA THANG DANG BA TRANG HUONG BA TRANG HUONG LUA CAN DO LUA LOC DO LUA MAN NEP GHIM HUONG NEP HUONG LANG NEP MAM SOM GIAI HUNG YEN NEP CAU NEP RAN QUANG TRANG CHIEM DO VEN DO NUOC MAN DANG LUA MUOI LUA TRI DO DANG NEP THANG COC MOI DANG TE TRANG HOA BINH VNPRC_14607 VNPRC_14615 VNPRC_14792 VNPRC_760 VNPRC_T5300 VNPRC_T5455 VNPRC_T6404 VNPRC_T6794 VNPRC_1048 VNPRC_1058 VNPRC_1325 VNPRC_1421 VNPRC_1427 VNPRC_4806 VNPRC_85 VNPRC_1625 VNPRC_5863 VNPRC_1629 VNPRC_1633 VNPRC_1638 VNPRC_1643 VNPRC_1845 VNPRC_1849 VNPRC_1851 VNPRC_135 VNPRC_2307 VNPRC_2310 VNPRC_2313 VNPRC_2315 VNPRC_2332 VNPRC_2367 VNPRC_2368 VNPRC_2369 VNPRC_2371 VNPRC_2395 VNPRC_149 VNPRC_3323 VNPRC_3332 VNPRC_3334 VNPRC_3351 VNPRC_3360 VNPRC_3363 VNPRC_3364 VNPRC_3368 VNPRC_3371 VNPRC_170 VNPRC_3400 VNPRC_3402 VNPRC_3426 VNPRC_3429 VNPRC_3433 VNPRC_3443 VNPRC_3483 VNPRC_3485 VNPRC_3487 VNPRC_3488 VNPRC_172 LAO CAI LAO CAI SON LA na na na na na NAM DINH HOA BINH TAY BAC BAC THAI BAC THAI HOA BINH na CAN THO BAC LIEU CAN THO CAN THO CAN THO CAN THO HA GIANG HA GIANG HA GIANG HAI DUONG KIEN GIANG KIEN GIANG KIEN GIANG KIEN GIANG KIEN GIANG NINH BINH NAM DINH NAM DINH NAM DINH na HAI PHONG QUANG NAM QUANG NAM QUANG NAM na QUANG NAM QUANG NAM QUANG NAM QUANG NAM QUANG NAM na QUANG BINH QUANG BINH QUANG TRI QUANG TRI QUANG TRI QUANG TRI QUANG NGAI BINH DINH BINH DINH BINH DINH HOA BINH TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD na TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD IMP TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD RL RL RL 174 na UP UP UP UP na na na na UP na na na na na na na na RL UP RL na RL RL RL RL RL RL MG MG MG na na UP UP UP na RL RL RL MG na na RL na IR na IR RL RL RL IR RL na Nhóm Phơn nhóm J J I I J J J J m J J I I J I I I I I I I I J I I I I I I I J J J J I I J I I I I I I I I I J J I I I I I I m I I J1 J1 Im I4 J1 J1 J1 J1 m J2 J1 na na J1 I4 I2 I2 I2 Im I2 Im Im J1 Im I4 I2 I2 I2 I2 na J4 J4 J4 J4 I1 I4 J2 I5 I5 I6 I6 I5 Im I6 I6 I4 na J2 I5 I4 I5 I5 na Im m I6 I4 KỦ hi u Tên Mƣ s ngơn hƠng gen N i thu m u Lo i gi ng H sinh thái Nhóm Phơn nhóm G70 G71 G72 G73 G74 G75 G77 G78 G79 G8 G80 G81 G83 G84 G85 G86 G87 G88 G89 G9 G90 G91 G92 G93 G94 G95 G96 G97 G98 G99 IR64 NPB COC MOI DANG LUA THOM LUA CANG DANG LUA CANG DANG NEP QUA CO RAU DANG NEP QUA CANG KIEN DANG CANG KIEN DANG LUA DA DANG CHON TU 502 HOC VIEN BA KTONG BA DO DANG NEP VANG BA CHO KTE CHANH CHUI TAN NGAN KHAU PAN PUA BLE MA MUA KHAU BO KHA LOC TRANG SOM PLAY CAU BLAO CLIA BLAO CO KEN BLAO CO CAM PO LE PO LAU XA LUA DO LUA CHAM CHIEM RONG TAM THOM NGOI TIA LUA CHAM BIEN IR64 NIPPONBARE VNPRC_3489 VNPRC_3493 VNPRC_3494 VNPRC_3495 VNPRC_3497 VNPRC_3498 VNPRC_3506 VNPRC_3507 VNPRC_3508 VNPRC_175 VNPRC_3517 VNPRC_3519 VNPRC_3522 VNPRC_3525 VNPRC_3550 VNPRC_3588 VNPRC_3886 VNPRC_3895 VNPRC_3947 VNPRC_200 VNPRC_4812 VNPRC_4815 VNPRC_4820 VNPRC_5034 VNPRC_5111 VNPRC_5127 VNPRC_6191 VNPRC_6199 VNPRC_6203 VNPRC_6234 IRGC_66970 IRGC_12731 BINH DINH BINH DINH BINH DINH BINH DINH BINH DINH BINH DINH BINH DINH BINH DINH BINH DINH na QUANG NGAI QUANG NGAI QUANG NGAI BINH DINH THANH HOA YEN BAI na na na na HOA BINH HOA BINH HOA BINH NGHE AN THUA THIEN HUE NAM DINH NAM DINH NAM DINH NAM DINH NINH BINH na na TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD TRAD IMP IMP RL RL RL RL RL RL RL RL RL na UP UP UP na MG na na na na na UP UP UP UP UP RL IR IR RL RL IR IR I I I I I I I I I I J m J J J J J J J I J J J I I I I m J I I J Im na Im I6 I6 na I6 I6 I6 I4 J3 m Jm J3 J4 J2 J1 J1 J1 I4 J1 J1 J1 I5 I5 I4 Im na J4 I4 I J na = khơng có thơng tin; TRAD = giống b n đ a; IMP= giống c i tiến; UP = canh tác n ng rẫy; RL = canh tác n ớc tr i đ t th p; MG = ngập mặn; IR = ch động t ới tiêu; I = indica; J = japonica; I1 đến I6 lƠ phơn nhóm c a indica; J1 đến J4 lƠ phơn nhóm c a japonica 175 Phụ lục Danh sách gen vùng QTLs quan tâm biết chức giả định QTL q33 q4 q83 q17 q72 q48 q5 q73 q84 q49 q55 q18 q56 NST 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 Vị Trí 139 820 145 577 146 251 168 470 170 712 383 047 390 051 392 081 409 167 409 700 412 579 154 326 173 691 215 586 226 000 231 961 245 732 250 820 265 477 663 539 665 412 669 952 674 400 678 840 682 019 707 498 710 978 713 412 752 218 765 773 770 140 776 973 783 189 800 436 805 584 810 313 815 175 830 325 839 934 844 429 851 954 862 560 872 110 877 647 896 685 395 154 397 652 402 620 404 405 415 416 417 283 421 318 809 557 814 778 823 869 828 553 833 613 837 475 841 736 843 574 851 606 856 467 861 816 875 786 377 261 387 691 396 150 400 890 404 307 412 786 10 291 889 10 299 033 10 303 744 10 312 341 15 990 976 17 697 080 17 715 289 19 264 464 19 281 427 19 286 868 19 295 569 Vị Trí Tính trạng Gene code 141 588 MRL, DWB6Os01g01290 147 852 MRL, DWB6Os01g01302 MRL, DWB60, 170 389 MRL, DWB6Os01g01340 173 434 MRL, DWB6Os01g01350 386 701 TIL Os01g01720 390 623 TIL Os01g01730 396 651 TIL Os01g01740 439 393 TIL 410 818 TIL Os01g01770 415 830 TIL Os01g01780 155 994 DRP Os01g04750 DRP 222 837 DEPTH Os01g04814 229 526 DEPTH Os01g04840 243 573 DEPTH 250 576 DEPTH Os01g04860 255 073 DEPTH Os01g04870 271 051 DEPTH Os01g04900 664 072 DWB60 Os01g05580 666 458 DWB60 Os01g05585 672 924 DWB60 Os01g05600 675 373 DWB60 Os01g05610 DWB60 684 988 DWB60 Os01g05620 711 428 NR_T Os01g05670 880 907 NR_T 716 075 NR_T Os01g05680 753 012 NR_T Os01g05760 768 644 NR_T Os01g05790 774 609 NR_T Os01g05800 781 775 NR_T Os01g05810 790 454 NR_T Os01g05820 803 742 NR_T Os01g05840 808 152 NR_T Os01g05860 815 017 NR_T Os01g05870 816 401 NR_T Os01g05880 836 425 NR_T Os01g05940 843 514 NR_T Os01g05960 858 134 NR_T Os01g05970 855 225 NR_T Os01g05980 867 272 NR_T Os01g06000 872 988 NR_T Os01g06010 882 686 NR_T Os01g06020 898 069 NR_T Os01g06060 397 000 TIL Os01g08760 402 081 TIL Os01g08770 407 292 TIL Os01g08780 TIL 416 132 TIL Os01g08790 419 160 TIL Os01g08800 423 107 TIL Os01g08810 811 617 DWB60, DR Os01g10890 819 207 DWB60, DR Os01g10900 828 251 DWB60, DR Os01g10920 830 832 DWB60, DR Os01g10930 834 107 DWB60, DR Os01g10940 839 898 DWB60, DR Os01g10950 843 574 DWB60, DR Os01g10960 848 945 DWB60, DR Os01g10970 DWB60, DRW 857 920 DWB60, DR Os01g10980 863 794 DWB60, DR Os01g10990 877 849 DWB60, DR Os01g11010 382 037 DRP Os01g11790 391 467 DRP Os01g11810 397 294 DRP Os01g11830 402 066 DRP Os01g11840 DRP 419 895 DRP Os01g11860 10 295 536 NR_T Os01g18320 NR_T 10 304 211 NR_T Os01g18340 10 314 826 NR_T Os01g18360 17 419 950 THK 17 706 376 DEPTH Os01g32280 DEPTH 19 280 458 THK Os01g34890 19 282 266 THK Os01g34900 THK 19 302 138 THK Os01g34920 Chức histone-like transcription factor and archaeal histone, putative, expressed shikimate kinase, putative, expressed Arabidopsis no AT3G26900.1 light-induced protein 1-like, putative, expressed SNF7 domain containing protein, putative, expressed pex14, putative, expressed serine/arginine repetitive matrix protein 2, putative, expressed protein kinase domain containing protein, expressed AT3G26740.1 no AT5G62810.1 no no ZOS1-01 - C2H2 zinc finger protein, expressed exostosin family protein, putative, expressed B3 DNA binding domain containing protein, expressed no AT4G16745.2 no vacuolar protein sorting-associating protein 4B, putative, expressed vacuolar protein sorting-associating protein 4B, putative, expressed AT2G27600.1 no DUF647 domain containing protein, putative, expressed WD domain, G-beta repeat domain containing protein, expressed peptidase M50 family protein, putative, expressed Exo70 exocyst complex subunit family, putative, expressed metallothionein, putative, expressed NBS-LRR disease resistance protein, putative, expressed Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed AT5G01510.1 AT5G58760.1 AT5G05740.1 no no no no NBS-LRR disease resistance protein, putative, expressed 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed no AT3G55360.1 geranylgeranyl transferase type-1 subunit beta, putative, expressed PAS2, putative, expressed SLT1 protein, putative, expressed inner membrane protein, putative, expressed gamma-glutamyltranspeptidase precursor, putative, expressed gamma-glutamyltranspeptidase precursor, putative, expressed oxidoreductase, short chain dehydrogenase/reductase family domain containing PPR repeat domain containing protein, putative, expressed receptor kinase, putative, expressed OsFBX1 - F-box domain containing protein, expressed receptor kinase, putative, expressed receptor kinase, putative, expressed OsFBO1 - F-box and other domain containing protein, expressed receptor kinase, putative, expressed PPR repeat containing protein, expressed Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed aspartyl-tRNA synthetase, putative, expressed gibberellin receptor GID1L2, putative, expressed choline/ethanolamine kinase, putative, expressed WD domain, G-beta repeat domain containing protein, expressed endonuclease/exonuclease/phosphatase family domain containing protein, AT2G39550.1 no AT2G37570.1 AT2G28800.1 AT4G29210.1 no AT2G37540.1 AT3G15200.1 no no no no no no AT5G59900.1 no AT4G33760.1 no no AT3G10530.1 no histone-like transcription factor and archaeal histone, putative, expressed cytochrome P450, putative, expressed cytochrome P450, putative, expressed CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent MRH1, putative, expressed peptide-N4-asparagine amidase A, putative, expressed peptide-N4-asparagine amidase A, putative, expressed S-adenosylmethionine synthetase 2, putative, expressed peptide-N4-asparagine amidase A, putative, expressed peptide-N4-asparagine amidase A, putative, expressed auxin-induced protein 5NG4, putative, expressed AT5G43250.1 no no AT5G45820.1 AT4G18640.1 no AT3G14920.1 no no no no auxin-induced protein 5NG4, putative, expressed integral membrane protein DUF6 containing protein, expressed peptide-N4-asparagine amidase A, putative, expressed GDSL-like lipase/acylhydrolase, putative, expressed powdery mildew res oryzain alpha chain precursor, putative, expressed xylem cysteine proteinase precursor, putative, expressed no no no no no no no DJ-1 family protein, putative, expressed protoporphyrinogen oxidase, chloroplast precursor, putative, expressed no AT4G01690.1 glycine-rich cell wall protein, putative, expressed OsIAA4 - Auxin-responsive Aux/IAA gene family member, expressed Too large fragment: no gene search transmembrane protein, putative, expressed no no GLUCAN SYNTHASE-LIKE protein, putative, expressed GLUCAN SYNTHASE-LIKE protein, putative, expressed no no beta-galactosidase precursor, putative, expressed AT1G31740.1 AT5G19930.1 QTL q6 q36 q37 q19 q50 q66 q20 q7 q78 q74 q64 q75 q38 q57 NST 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 Vị Trí 19 303 350 27 301 427 27 303 111 27 317 556 27 325 298 27 326 050 27 336 260 28 555 935 28 566 625 28 568 721 28 579 082 28 582 843 35 302 492 35 307 113 35 309 604 35 314 359 35 320 780 35 328 776 39 085 081 39 091 728 39 099 009 39 102 194 39 102 276 39 136 937 39 141 130 39 158 153 42 689 893 42 695 091 42 699 971 42 704 282 42 706 214 42 706 524 42 710 696 42 713 303 42 715 724 42 723 514 42 727 426 988 483 015 093 019 765 028 562 038 459 188 722 197 353 208 684 217 128 228 456 10 490 446 10 503 049 10 505 253 14 355 563 14 366 103 23 527 518 23 531 392 23 535 117 23 538 347 23 549 174 23 550 168 23 559 740 23 562 276 23 572 961 25 967 752 25 972 448 25 990 556 25 996 914 30 736 687 30 745 336 30 750 564 30 756 675 30 762 847 31 636 492 31 648 468 31 652 149 31 663 080 31 676 446 35 427 552 35 431 032 35 440 926 35 447 595 35 453 974 35 498 222 35 501 040 35 502 083 Vị Trí 19 306 036 27 303 025 27 312 308 27 321 710 27 327 030 27 339 363 28 560 699 28 567 663 28 569 792 28 586 527 35 305 739 35 377 267 35 312 765 35 318 845 35 327 164 35 331 222 39 091 029 39 095 339 39 101 767 39 143 941 39 105 764 39 139 380 39 145 479 39 165 729 42 696 058 42 699 059 42 701 323 42 705 375 42 707 981 42 712 138 42 713 811 42 721 562 42 726 767 42 728 363 998 043 028 028 030 420 043 329 193 632 204 374 212 210 231 985 10 496 413 10 508 541 14 356 170 23 530 251 23 533 277 23 536 974 23 540 253 23 554 382 23 561 669 23 566 153 23 575 571 25 968 734 25 978 887 25 999 176 30 743 642 30 749 371 30 756 536 30 762 768 31 638 258 31 650 538 31 665 818 31 677 556 35 430 640 35 432 840 35 442 608 35 449 965 35 501 036 35 501 778 35 507 050 Tính trạng THK TIL TIL TIL TIL TIL TIL NCR NCR NCR NCR NCR NCR NCR NCR NCR NCR NCR DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T DW2040 DW2040 DW2040 DW2040 DW2040 DEPTH DEPTH DEPTH DEPTH DEPTH TIL TIL TIL DRW DRW DWB60 DWB60 DWB60 DWB60 DWB60 DWB60 DWB60 DWB60 DWB60 DW0020 DW0020 DW0020 DW0020 DWB60 DWB60 DWB60 DWB60 DWB60 NCR NCR NCR NCR NCR THK THK THK THK THK THK THK THK Gene code Os01g34930 Os01g47730 Os01g47740 Os01g47750 Chức callose synthase, putative, expressed ras-related protein, putative, expressed zinc finger, C3HC4 type domain containing protein, expressed splicing factor U2AF 35 kDa subunit, putative, expressed Arabidopsis no no no no Os01g47760 Os01g47770 Os01g49690 Os01g49710 Os01g49720 OsGrx_I1 - glutaredoxin subgroup III, expressed CS domain containing protein, putative, expressed Ser/Thr protein phosphatase family protein, putative, expressed glutathione S-transferase, putative, expressed glutathione S-transferase, putative, expressed AT1G28480.1 AT5G58740.1 AT1G50370.1 no no Os01g49770 Os01g61010 zinc finger, C3HC4 type domain containing protein, expressed nodulin, putative, expressed AT1G17970.1 no Os01g61020 Os01g61030 Os01g61044 Os01g61060 Os01g67330 Os01g67340 Os01g67350 curculin-like lectin family protein, putative, expressed VHS and GAT domain containing protein, expressed transmembrane amino acid transporter protein, putative, expressed SAG20, putative, expressed nucleotide-sugar transporter family protein, putative, expressed STRUBBELIG-RECEPTOR FAMILY precursor, putative, expressed cysteine protease, putative, expressed AT3G51710.1 no AT3G56200.1 no no no no Os01g67360 Os01g67390 Os01g67410 Os01g67420 Os01g73680 Os01g73690 Os01g73700 Os01g73710 methyltransferase, putative, expressed POEI32 - Pollen Ole e I allergen and extensin family protein precursor, expressed AP2/EREBP transcription factor BABY BOOM, putative, expressed lipase, putative, expressed aspartyl aminopeptidase, putative, expressed pentatricopeptide, putative, expressed RCLEA2 - Root cap and Late embryogenes RCLEA3 - Root cap and Late embryogenes no no no no AT5G04710.1 AT2G16650.1 no no Os01g73720 Os01g73730 Os01g73740 Os01g73750 Os01g73760 Os01g73770 Os02g09720 RCLEA4 - Root cap and Late embryogenes RCLEA5 - Root cap and Late embryogenes lipase, putative, expressed Leucine Rich Repeat family protein, expressed IPP transferase, putative, expressed dehydration-responsive element-binding protein, putative, expressed multidrug res no no no AT2G36370.1 AT2G27760.1 no no Os02g09740 Os02g09750 Os02g09770 Os02g11940 Os02g11960 Os02g11980 STRUBBELIG-RECEPTOR FAMILY precursor, putative, expressed lycopene beta cyclase, chloroplast precursor, putative, expressed abhydrolase domain-containing protein FAM108C1, putative, expressed sterol glucosyltransferase, putative, expressed ABC transporter, ATP-binding protein, putative, expressed receptor-like protein kinase precursor, putative, expressed AT4G22130.1 AT3G10230.1 no AT5G24750.1 no no Os02g12010 Os02g18070 Os02g18080 receptor-like protein kinase precursor, putative, expressed NB-ARC domain containing protein, expressed NB-ARC domain containing protein, expressed no no no Os02g24740 OsSAUR9 - Auxin-responsive SAUR gene family member, expressed no Os02g38920 Os02g38930 Os02g38940 Os02g38950 Os02g38980 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed cytochrome P450 71D7, putative, expressed cytochrome P450, putative, expressed PPR repeat containing protein, expressed bromodomain domain containing protein, expressed no no no AT3G04130.1 AT5G14270.2 Os02g39000 Os02g39010 Os02g39030 Os02g43120 Os02g43130 remorin C-terminal domain containing protein, putative, expressed cyclin-dependent kinase G-1, putative, expressed transmembrane protein 17, putative, expressed zinc finger, C3HC4 type domain containing protein, expressed kinesin motor domain containing protein, expressed no no no no no Os02g43150 Os02g50340 Os02g50350 Os02g50360 Os02g50370 GATA zinc finger domain containing protein, expressed membrane attack complex component/perforin/complement C9, putative, dihydroorotate dihydrogenase protein, putative, expressed nicalin, putative, expressed helicase domain-containing protein, putative, expressed no AT1G14780.1 AT3G17810.1 AT3G52640.2 AT1G33390.1 Os02g51660 Os02g51670 trpH, putative, expressed ethylene-responsive transcription factor, putative, expressed no AT1G78080.1 Os02g51680 Os02g51710 Os02g57854 Os02g57860 Os02g57890 Os02g57910 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed wound/stress protein, putative, expressed vacuolar ATP synthase subunit F, putative, expressed OsFBX71 - F-box domain containing protein, expressed OsFBX72 - F-box domain containing protein, expressed OsFBX73 - F-box domain containing protein, expressed no AT4G39730.1 AT4G02620.1 no no no Os02g57960 Os02g57965 Os02g57980 Leucine Rich Repeat family protein, expressed F-box domain containing protein, expressed DEAD/DEAH box helicase, putative, expressed no no AT2G07750.1 QTL q58 q1 q39 q8 q9 q59 q85 q10 q80 q21 q11 q65 q40 q51 q34 q81 NST 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 Vị Trí 35 507 155 35 509 414 35 517 531 35 526 587 35 534 139 525 078 540 151 551 775 555 490 555 683 561 501 566 777 569 977 14 513 696 14 526 166 14 538 130 14 543 326 14 545 715 14 548 905 14 552 198 14 553 102 14 559 322 14 567 492 27 644 551 27 652 240 27 657 195 27 662 425 27 678 462 29 766 132 29 774 810 29 784 613 29 793 313 36 124 403 36 132 038 36 150 664 36 156 421 170 196 005 077 029 726 040 350 13 232 104 20 495 975 20 499 421 20 517 263 20 519 152 20 526 065 20 534 071 30 284 968 30 297 864 30 302 841 30 311 519 30 317 693 30 413 784 30 416 446 30 428 188 30 433 199 30 438 406 30 439 467 398 476 418 020 422 947 446 336 16 184 117 16 205 923 16 216 524 16 267 416 16 289 244 16 296 914 16 302 689 16 306 507 16 320 971 16 327 595 16 343 854 16 362 685 16 466 130 16 477 623 18 106 224 18 109 976 18 126 333 880 536 893 929 900 862 901 540 Vị Trí 35 510 880 35 510 032 35 523 358 35 533 091 35 536 130 531 357 550 714 554 415 558 352 565 365 568 821 571 884 14 518 548 14 530 851 14 539 609 14 547 929 14 549 608 14 552 749 14 556 229 14 561 845 14 571 763 27 647 533 27 659 735 27 663 177 27 681 754 29 774 184 29 776 910 29 787 015 36 132 012 36 134 636 36 152 517 006 210 043 003 20 497 051 20 501 058 20 520 509 20 528 257 20 534 774 30 286 216 30 305 606 30 316 303 30 321 649 30 415 688 30 424 148 30 431 745 30 438 364 30 442 859 403 351 422 194 450 295 16 186 813 16 458 100 16 220 140 16 273 970 16 296 693 16 300 385 16 306 135 16 310 548 16 321 771 16 328 435 16 346 618 16 364 011 16 466 923 16 485 544 18 110 987 18 129 661 891 125 894 306 909 008 930 717 Tính trạng THK THK THK THK THK LLGHT LLGHT LLGHT LLGHT LLGHT LLGHT LLGHT LLGHT NCR NCR NCR NCR NCR NCR NCR NCR NCR NCR TIL, NCR TIL, NCR TIL, NCR TIL, NCR TIL, NCR TIL TIL TIL TIL THK THK THK THK DRP TIL TIL TIL SRP DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH TIL TIL TIL TIL TIL DW0020 DW0020 DW0020 DW0020 DW0020 DW0020 NCR NCR NCR NCR NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T NR_T MRL MRL MRL SRP SRP SRP SRP Gene code Os02g57990 Chức methionine adenosyltransferase regulatory beta subunit-related, putative, Arabidopsis AT4G00560.4 Os02g58020 Os02g58030 Os02g58040 Os03g06940 Os03g06950 Os03g06960 Os03g06970 ABC transporter, ATP-binding protein, putative, expressed leucine-rich repeat-containing protein 40, putative, expressed OsFBX75 - F-box domain containing protein, expressed beta-galactosidase, putative, expressed ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed vesicle-associated membrane protein, putative, expressed tetratricopeptide repeat domain containing protein, expressed AT1G64550.1 AT3G15410.2 no AT4G36360.1 AT3G47890.1 no no Os03g06980 Os03g06990 Os03g07000 Os03g25390 Os03g25400 Os03g25430 nucleic acid binding protein, putative, expressed oxidoreductase, putative, expressed oxidoreductase, putative, expressed novel plant SNARE 11, putative, expressed kinase, putative, expressed transcription regulator, putative, expressed AT3G07030.1 no no AT3G17440.1 no no Os03g25450 Os03g25460 Os03g25470 Os03g25480 Os03g25490 Os03g25500 Os03g48480 Os03g48490 h/ACA ribonucleoprotein complex subunit 4, putative, expressed OsRCI2-4 - Putative low temperature and salt responsive protein, expressed ctr copper transporter family protein, putative, expressed cytochrome P450, putative, expressed cytochrome P450 72A1, putative, expressed cytochrome P450 72A1, putative, expressed thioesterase family protein, putative, expressed centromere protein, putative, expressed no no no no no no AT1G48320.1 AT4G38070.1 Os03g48520 Os03g48560 Os03g51900 Os03g51910 Os03g51920 PB1 domain containing protein, expressed N-acetylglucosaminyltransferase, putative, expressed DEAD-box ATP-dependent RNA helicase, putative, expressed basic helix-loop-helix protein, putative, expressed peptidase, M50 family, putative, expressed no no AT4G34910.1 AT1G10120.1 AT1G17870.1 Os03g63940 Os03g63950 Os03g63970 CBS domain containing membrane protein, putative, expressed plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, gibberellin 20 oxidase 1, putative, expressed no AT5G24490.1 AT5G51810.1 Os04g09390 HEV3 - Hevein family protein precursor, expressed no Os04g09430 cytochrome P450, putative, expressed no Os04g33830 Os04g33840 membrane protein, putative, expressed pentatricopeptide, putative, expressed AT1G08380.1 AT5G37570.1 Os04g33870 Os04g33880 Os04g33900 Os04g51140 Os04g51172 DUF623 domain containing protein, expressed HVA22, putative, expressed ctr copper transporter family protein, putative, expressed E2F-related protein, putative, expressed Disease resistance/zinc finger/chromosome condensation-like region protein, no no no no no Os04g51180 Os04g51190 Os04g51360 Os04g51370 Os04g51380 Os04g51390 GPR89A, putative, expressed growth-regulating factor, putative, expressed oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed protein kinase, putative, expressed protein-Saldose 1-epimerase, putative, expressed AT1G64990.1 no AT1G31600.1 no AT5G08335.1 no Os04g51400 Os05g13330 Os05g13370 zinc finger, C3HC4 type domain containing protein, expressed per1-like family protein, putative, expressed OsRhmbd12 - Putative Rhomboid homologue, expressed no AT1G16560.1 AT5G25752.1 Os05g13420 Os05g27790 large tegument protein, putative, expressed membrane associated DUF588 domain containing protein, putative, expressed no AT2G38480.1 Os05g27820 Os05g27880 Os05g27920 Os05g27930 Os05g27940 Os05g27950 Os05g27970 Os05g27980 Os05g28010 Os05g28040 Os05g28150 Os05g28180 Os05g31140 patellin protein, putative, expressed BBF1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C d phox domain-containing protein, putative, expressed AP2 domain containing protein, expressed 40S ribosomal protein S7, putative, expressed DUF538 domain containing protein, putative, expressed POEI26 - Pollen Ole e I allergen and extensin family protein precursor, putative, DUF260 domain containing protein, putative, expressed TATA-binding protein-associated factor TAFII55 family protein, putative, expressed DUF640 domain containing protein, putative, expressed lipase, putative, expressed AMP deaminase, putative, expressed glycosyl hydrolases family 17, putative, expressed AT3G51670.1 AT2G30600.5 AT5G58440.1 no no AT3G08890.1 no AT2G30130.1 AT1G55300.2 no no no no Os05g31160 Os06g04399 Os06g04420 Os06g04450 peptide chain release factor 2, putative, expressed hypersensitive-induced reaction protein 4, putative, expressed lipoxygenase 4, putative Sec1 family transport protein, putative, expressed AT3G57190.1 no no no QTL q67 q69 q86 q60 q2 q87 q76 q41 q77 q79 q68 q35 NST 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 Vị Trí 1 909 663 927 256 931 296 949 424 994 993 008 139 015 962 019 847 021 017 027 361 033 795 040 908 093 231 127 010 137 248 142 851 587 789 593 689 601 154 612 249 616 608 630 848 633 663 640 591 647 954 649 357 653 457 659 377 667 486 825 468 835 233 841 256 841 699 845 545 848 384 920 479 925 697 933 984 940 906 953 935 963 879 982 084 983 955 996 891 011 835 031 719 038 363 043 564 068 591 097 281 185 455 13 996 414 14 006 453 14 008 461 14 078 258 14 126 219 15 840 814 15 848 243 15 863 214 15 877 891 16 774 133 16 798 522 16 896 515 16 912 708 17 003 628 17 005 559 17 035 080 17 044 170 17 054 545 19 866 070 19 870 050 20 010 528 20 019 172 20 025 972 20 033 279 20 051 265 20 064 666 20 085 771 20 087 862 20 098 734 20 102 688 20 131 644 20 138 220 Vị Trí 913 030 930 883 936 380 953 325 996 159 013 539 019 327 022 602 030 375 034 043 041 551 100 936 142 663 150 976 591 087 597 978 615 892 618 211 632 543 635 469 645 101 649 523 655 652 667 061 670 980 829 696 841 307 083 414 844 834 845 970 854 067 924 037 927 406 935 241 941 692 956 231 967 790 983 859 990 958 004 842 014 837 035 243 041 831 049 979 070 044 104 472 13 997 319 14 009 298 16 515 631 14 082 303 15 842 660 15 848 563 15 872 704 15 879 564 16 785 410 16 897 661 17 010 231 17 036 530 17 036 915 17 046 351 17 066 625 19 870 006 20 145 257 20 012 036 20 021 317 20 031 155 20 034 343 20 052 498 20 065 169 20 086 592 20 089 203 20 100 496 20 104 439 20 132 168 20 138 690 Tính trạng Gene code SRP Os06g04460 SRP Os06g04500 SRP Os06g04510 SRP Os06g04530 DW2040 Os06g08250 DW2040 Os06g08280 DW2040 Os06g08290 DW2040 Os06g08300 DW2040 DW2040 Os06g08310 DW2040 Os06g08320 DW2040 Os06g08340 DW4060, R Os06g08400 DW4060, RDW, DRW DW4060, R Os06g08440 DW4060, R Os06g08450 R_S Os06g09120 R_S Os06g09130 R_S R_S Os06g09170 R_S Os06g09180 THK Os06g09210 THK Os06g09220 THK Os06g09230 THK Os06g09240 THK THK Os06g09270 THK Os06g09280 THK Os06g09290 LLGHT Os06g14040 LLGHT Os06g14050 LLGHT LLGHT Os06g14060 LLGHT Os06g14070 LLGHT Os06g14080 LLGHT Os06g14190 LLGHT Os06g14200 LLGHT Os06g14220 LLGHT Os06g14240 LLGHT Os06g14260 LLGHT Os06g14280 LLGHT Os06g14310 LLGHT Os06g14324 LLGHT Os06g14350 LLGHT Os06g14370 LLGHT Os06g14390 LLGHT Os06g14400 LLGHT Os06g14406 LLGHT Os06g14420 LLGHT Os06g14440 R_S DWB60 Os06g23950 DWB60 Os06g23980 DWB60 DWB60 Os06g24070 NCR, DW0020, RDW DWB60 Os06g27910 DWB60 Os06g27920 DWB60 Os06g27970 DWB60 Os06g27980 DWB60 Os06g29350 DWB60 DRW Os06g29470 DRW DW2040 Os06g29650 DW2040 DW2040 Os06g29690 DW2040 Os06g29700 DW2040 Os06g29710 NCR,MRL Os06g34120 NCR, MRL NCR Os06g34390 NCR Os06g34400 NCR Os06g34420 NCR Os06g34430 NCR Os06g34450 NCR Os06g34470 NCR Os06g34520 NCR Os06g34530 NCR Os06g34560 NCR Os06g34564 NCR Os06g34620 NCR Os06g34640 Chức hypersensitive-induced response protein, putative, expressed cornichon protein, putative, expressed enolase, putative, expressed OsClp9 - Putative Clp protease homologue, expressed zinc finger family protein, putative, expressed protein kinase domain containing protein, expressed MYB family transcription factor, putative, expressed FAD dependent oxidoreductase domain containing protein, expressed Arabidopsis AT5G51570.1 AT1G12390.1 no AT1G12410.1 no AT3G46920.1 no AT2G22650.1 plasma membrane ATPase, putative, expressed 60S ribosomal protein L39, putative, expressed AP2 domain containing protein, expressed LIM domain-containing protein, putative, expressed no no no AT4G36860.1 two-component response regulator, putative, expressed histidine kinase, putative, expressed glutamate receptor 2.8 precursor, putative, expressed glutamate receptor 2.8 precursor, putative, expressed AT2G25180.1 AT2G47430.1 no no zinc ion binding protein, putative, expressed OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed cytochrome P450 72A1, putative, expressed cytochrome P450 72A1, putative, expressed serine threonine kinase, putative, expressed anthocyanidin 3-O-glucosyltransferase, putative, expressed AT1G55915.1 AT1G51660.1 no no no AT5G17050.1 hypro1, putative, expressed ATP-dependent RNA helicase, putative, expressed 26S protease regulatory subunit 7, putative, expressed ThiF family domain containing protein, putative, expressed membrane attack complex component/perforin/complement C9, putative, no AT1G26370.1 AT1G53750.1 AT5G37530.1 no MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and DUF581 domain containing protein, expressed ATMAP70 protein, putative, expressed NF-X1-type zinc finger protein, putative, expressed zinc finger, C3HC4 type domain containing protein, expressed STF-1, putative, expressed hsp20/alpha crystallin family protein, putative, expressed lectin-like receptor kinase, putative, expressed cysteine-rich repeat secretory protein precursor, putative, expressed potassium channel AKT1, putative, expressed caleosin related protein, putative, expressed caleosin related protein, putative, expressed caleosin related protein, putative, expressed 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed SYD, putative, expressed hydrolase, NUDIX family, domain containing protein, expressed DRD1, putative, expressed no no no AT1G10170.1 AT4G24204.3 no AT5G37670.1 no no no no no AT1G70670.1 no no no no no OsMADS59 - MADS-box family gene with MIKCc type-box transcription factor, putative, expressed no no myb-like DNA-binding domain containing protein, expressed AT2G20570.2 oleosin, putative, expressed zinc ion binding protein, putative, expressed FKBP12-interacting protein of 37 kDa, putative, expressed methyltransferase domain containing protein, expressed myosin, putative, expressed no no AT3G54170.1 AT3G05390.1 AT1G08730.1 peroxidase precursor, putative, expressed no CDP-diacylglycerol inositol 3-phosphatidyltransferase 1, putative, expressed no dynein light chain type domain containing protein, expressed OsFBD11 - F-box and FBD domain containing protein, expressed OsFBD12 - F-box and FBD domain containing protein, expressed GDSL-like lipase/acylhydrolase, putative, expressed no no no no zinc finger, C3HC4 type domain containing protein, expressed zinc finger, C3HC4 type domain containing protein, expressed DEAD/DEAH box helicase domain protein, putative, expressed zinc finger protein, putative, expressed zinc finger, C3HC4 type domain containing protein, expressed zinc finger, C3HC4 type domain containing protein, expressed CAF1 family ribonuclease containing protein, putative, expressed zinc finger, C3HC4 type domain containing protein, expressed zinc finger, C3HC4 type domain containing protein, expressed mucin, putative Zinc finger, C3HC4 type domain containing protein, expressed zinc finger, C3HC4 type domain containing protein, expressed no no no no no no no no no no no no QTL q82 q22 q88 q23 q24 q42 q61 q52 q15 q12 q53 q25 q3 q62 q26 NST 6 6 6 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 Vị Trí 20 143 793 20 145 118 20 158 641 21 692 500 21 695 602 21 700 478 21 708 951 21 716 314 21 730 402 21 735 125 22 821 117 22 824 676 22 826 683 24 668 182 30 161 499 30 173 485 30 176 431 30 183 274 30 187 080 30 196 097 30 967 319 30 976 066 30 986 739 30 993 254 30 995 770 31 013 731 446 619 457 738 464 358 467 286 471 174 474 875 15 406 442 15 421 670 15 424 576 15 440 889 15 448 959 17 186 673 17 195 209 17 198 415 17 207 987 17 230 234 18 479 043 18 497 999 18 507 925 18 509 977 18 519 358 18 528 508 18 532 539 20 803 306 20 806 654 20 808 033 20 812 882 20 825 918 20 842 619 22 169 511 22 174 085 22 184 376 22 187 290 29 458 303 29 465 173 29 468 499 29 478 758 29 484 521 29 490 011 385 768 390 729 407 120 413 495 430 196 523 651 544 057 549 380 562 428 15 476 556 15 494 238 15 504 028 15 510 426 27 380 765 27 393 219 27 397 948 27 403 439 27 408 976 Vị Trí 20 144 666 20 148 099 20 165 624 21 692 819 21 699 561 21 703 430 21 714 106 21 716 317 21 733 637 21 739 838 22 823 478 22 826 319 22 829 858 30 162 653 30 178 066 30 186 939 30 189 238 30 197 605 30 973 486 30 981 070 30 988 361 30 995 283 31 021 754 451 162 460 218 465 341 468 754 477 655 15 409 801 15 425 213 15 442 180 15 451 104 17 187 640 17 196 988 17 209 485 17 245 358 18 481 052 18 502 813 18 515 210 18 523 619 18 531 797 18 535 080 20 805 476 20 807 546 20 812 544 20 817 921 20 845 992 22 171 932 22 175 036 22 187 030 22 189 082 29 459 301 29 475 499 29 483 659 29 487 438 29 492 173 389 031 400 757 416 924 434 313 532 056 557 530 565 405 15 483 069 15 501 850 15 546 812 15 512 115 27 390 339 27 396 113 27 402 221 27 406 438 27 413 886 Tính trạng NCR NCR NCR DRP DRP DRP DRP DRP DRP DRP DEPTH DEPTH DEPTH R_S DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH NCR NCR NCR NCR NCR NCR THK THK THK THK THK NR_T NR_T NR_T NR_T NR_T SDW, PDW SDW, PDW SDW, PDW SDW, PDW SDW, PDW SDW, PDW SDW, PDW TIL TIL TIL TIL TIL TIL NR_T NR_T NR_T NR_T DEPTH DEPTH DEPTH DEPTH DEPTH DEPTH LLGHT LLGHT LLGHT LLGHT LLGHT THK THK THK THK DEPTH DEPTH DEPTH DEPTH SDW SDW SDW SDW SDW Gene code Os06g34650 Os06g34660 Os06g34690 Os06g36820 Os06g36830 Os06g36840 Os06g36850 Chức zinc finger, C3HC4 type domain containing protein, expressed X8 domain containing protein, expressed T-complex protein, putative, expressed cysteine synthase, putative, expressed cysteine synthase, mitochondrial precursor, putative, expressed cysteine synthase, putative, expressed cysteine synthase, putative, expressed Arabidopsis no AT3G58100.1 AT5G26360.1 no no no no Os06g36880 Os06g36890 Os06g38510 Os06g38520 cysteine synthase, putative, expressed glycosyl transferase, group domain containing protein, expressed pectate lyase precursor, putative, expressed pectate lyase family protein, expressed no no no no Os06g49830 Os06g49840 SHI, putative, expressed OsMADS16 - MADS-box family gene with MIKCc type-box, expressed AT3G51060.1 AT3G54340.1 Os06g49860 Os06g49870 Os06g49880 Os06g51190 Os06g51200 Os06g51210 Os06g51220 methyltransferase, putative, expressed tRNA-dihydrouridine synthase, putative, expressed B-box zinc finger family protein, putative, expressed lysine ketoglutarate reductase trans-splicing related 1, putative, expressed lysine ketoglutarate reductase trans-splicing related 1, putative, expressed zinc finger family protein, putative, expressed HMG1/2, putative, expressed AT3G51070.1 AT5G67220.1 no no no no no Os06g51250 Os07g01760 Os07g01780 Os07g01800 Os07g01810 Os07g01820 EF hand family protein, putative, expressed aminotransferase, classes I and II, domain containing protein, expressed GTPase activating protein, putative, expressed cysteine proteinase EP-B precursor, putative, expressed potassium channel protein, putative, expressed OsMADS15 - MADS-box family gene with MIKCc type-box, expressed no AT1G70580.1 no no no no Os07g26690 Os07g26700 aquaporin protein, putative, expressed UPF0041 domain containing protein, putative, expressed no AT4G22310.1 Os07g26720 Os07g26740 Os07g29310 Os07g29320 Os07g29330 OsRR7 type-A response regulator, expressed 60S ribosomal protein L44, putative, expressed OsSAUR30 - Auxin-responsive SAUR gene family member, expressed rRNA-processing protein EBP2, putative, expressed serine/threonine-protein kinase CTR1, putative, expressed no no no AT3G22660.1 no Os07g29360 Os07g31210 Os07g31250 tetratricopeptide repeat domain containing protein, expressed OsWAK70 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed OsWAK69 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed no no no Os07g31270 Os07g31280 Os07g31290 Os07g31300 Os07g34710 Os07g34720 Os07g34730 Os07g34740 cupin 2, conserved barrel domain protein, putative, expressed casein kinase II subunit beta-4, putative, expressed tyrosine protein kinase domain containing protein, putative, expressed ATP synthase delta chain, mitochondrial precursor, putative, expressed peroxidase precursor, putative, expressed harpin-induced protein domain containing protein, expressed acyltransferase, putative, expressed NUC153 domain containing protein, expressed AT4G17050.1 no no no no AT4G05220.1 no AT3G01160.1 Os07g34780 Os07g37010 ankyrin repeat domain-containing protein, putative, expressed cyclin, putative, expressed no AT4G03270.1 Os07g37030 Os07g37040 Os07g49200 Os07g49210 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, PB1 domain containing protein, expressed membrane associated DUF588 domain containing protein, putative, expressed helicase conserved C-terminal domain containing protein, expressed AT4G03280.1 AT4G05150.1 no AT3G42670.1 Os07g49230 Os07g49240 Os07g49250 Os08g07830 Os08g07840 Os08g07850 ubiquitin-activating enzyme, putative, expressed MRH1, putative, expressed thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing DUF292 domain containing protein, expressed PolI-like DNA polymerase, putative, expressed PolI-like DNA polymerase, putative, expressed no no no AT1G34220.1 AT1G50840.1 no Os08g07880 Os08g08000 phosphopantothenate cysteine ligase, putative, expressed DNA binding protein, putative, expressed no AT3G24870.1 Os08g08030 Os08g08040 Os08g25430 Os08g25460 double-strand break repair protein MRE11, putative, expressed LSM domain containing protein, expressed cysteine-rich receptor-like protein kinase 35 precursor, putative, expressed transcription initiation factor, putative, expressed no AT2G03870.2 no AT1G03280.1 Os08g25490 Os08g43334 Os08g43350 Os08g43360 Os08g43370 Os08g43380 berberine and berberine like domain containing protein, expressed HSF-type DNA-binding domain containing protein, expressed NC domain-containing protein, putative, expressed RNA recognition motif containing protein, putative, expressed 6-phosphogluconolactonase, putative, expressed TBC domain containing protein, expresse no no no AT1G21320.1 no no QTL q16 q70 q27 q28 q43 q44 q45 q46 q13 q63 q29 q30 q31 q71 q47 q32 q14 NST 8 10 10 10 10 10 10 10 10 10 10 10 10 10 10 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 Vị Trí 27 413 965 27 420 501 27 435 126 11 581 250 11 589 746 11 596 532 11 605 114 11 691 142 11 698 992 11 712 638 11 723 419 11 731 592 15 290 345 15 294 053 15 303 901 15 307 568 15 324 463 272 788 282 058 877 895 909 213 927 995 938 345 948 771 965 406 970 074 972 097 16 559 637 16 917 660 16 926 681 16 929 527 16 937 492 16 943 497 17 108 744 17 111 220 17 117 873 17 126 630 17 169 023 17 208 164 17 229 938 17 234 285 17 259 927 17 284 028 17 291 100 17 329 608 17 843 772 18 092 965 18 096 831 18 101 744 22 550 213 22 555 514 22 561 543 22 569 981 22 579 249 22 600 678 157 980 169 472 172 671 180 358 185 335 189 043 200 471 305 139 309 401 315 753 323 261 332 836 337 191 342 002 664 708 681 309 25 116 029 25 142 679 25 142 777 Vị Trí 27 422 836 27 442 742 11 585 288 11 599 845 11 609 036 11 695 039 11 713 558 11 726 426 11 732 917 15 292 947 15 295 204 15 309 302 15 331 200 284 700 879 548 917 123 939 755 951 203 970 029 977 435 004 279 16 919 756 16 937 157 16 939 353 16 946 706 17 115 599 17 318 688 17 121 629 17 132 216 17 169 357 17 210 164 17 231 917 17 238 178 17 264 943 17 285 405 17 294 288 17 332 992 17 858 468 18 095 638 18 102 879 22 554 890 22 561 050 22 565 402 22 576 763 22 602 126 165 291 170 473 175 788 181 099 191 517 202 202 307 108 310 704 317 248 333 568 339 507 344 257 669 593 25 119 760 25 148 196 Tính trạng Gene code Chức SDW SDW Os08g43390 cytochrome P450, putative, expressed SDW Os08g43400 kinesin motor domain containing protein, expressed DW4060, D Os10g22380 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed DW4060, DRW DW4060, D Os10g22410 yippee zinc-binding protein, putative, expressed DW4060, D Os10g22430 gibberellin response modulator protein, putative, expressed DEPTH Os10g22560 peptide transporter PTR2, putative, expressed DEPTH Os10g22570 cellulase, putative, expressed DEPTH DEPTH Os10g22590 POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed DEPTH Os10g22600 ethylene-responsive transcription factor, putative, expressed DEPTH Os10g29430 RNA-directed DNA polymerase, putative, expressed DEPTH Os10g29440 speckle-type POZ protein, putative, expressed DEPTH Os10g29470 dehydrogenase, putative, expressed DEPTH DEPTH Os10g29495 speckle-type POZ protein, putative, expressed NCR NCR Os11g09864 wali7, putative, expressed NCR Os11g14140 OsFBK25 - F-box domain and kelch repeat containing protein, expressed NCR Os11g14170 OsDegp12 - Putative Deg protease homologue, expressed NCR NCR Os11g14190 ARGOS, putative, expressed NCR, DW00 Os11g16260 laccase precursor protein, putative, expressed NCR, DW00 Os11g16280 F-box domain containing protein, expressed NCR, DW00 Os11g16290 NIN, putative, expressed NCR, DW0020, DW2040, RDW, PDW NCR TIL Os11g29190 40S ribosomal protein S5, putative, expressed TIL Os11g29200 protein transport protein, putative, expressed TIL TIL Os11g29210 resistance-gene-interacting protein, putative, expressed TIL Os11g29230 pentatricopeptide repeat protein PPR986-12, putative, expressed THK Os11g29490 plasma membrane ATPase, putative, expressed THK THK Os11g29510 cysteine-rich receptor-like protein kinase 35 precursor, putative, expressed THK Os11g29520 NBS-LRR d THK Os11g29600 RING zinc finger ankyrin protein, putative, expressed THK Os11g29690 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed THK Os11g29710 OsFBO4 - F-box and other domain containing protein, expressed THK Os11g29720 cytochrome P450, putative, expressed THK Os11g29750 plasma membrane ATPase, putative, expressed THK Os11g29780 plant-specific domain TIGR01627 family protein, expressed THK Os11g29790 receptor kinase, putative, expressed THK Os11g29850 ABC transporter, ATP-binding protein, putative, expressed DEPTH DEPTH Os11g31090 transferase family protein, putative, expressed DEPTH Os11g31100 gibberellin response modulator protein, putative, expressed DEPTH DEPTH Os11g38010 targeting protein for Xklp2, putative, expressed DEPTH Os11g38020 GTPase of unknown function domain containing protein, putative, expressed DEPTH Os11g38030 CDK5RAP1, putative, expressed DEPTH Os11g38050 phosphoesterase family protein, putative, expressed DEPTH DEPTH Os11g38100 OsFBDUF55 - F-box and DUF domain containing protein, expressed DW4060 Os12g03080 rp3 protein, putative, expressed DW4060 Os12g03090 ribosomal protein, putative, expressed DW4060 Os12g03100 exostosin family domain containing protein, expressed DW4060 Os12g03110 ZF-HD protein dimer DW4060 DW4060 Os12g03130 CDC45A - Putative DNA replication initiation protein, expressed DW4060 Os12g03150 myb-like DNA-binding domain containing protein, putative, expressed NCR Os12g03360 EMB1379, putative, expressed NCR Os12g03370 harpin-induced protein domain containing protein, expressed NCR Os12g03390 OsFBX435 - F-box domain containing protein, expressed NCR NCR Os12g03420 VQ domain containing protein, putative, expressed NCR Os12g03430 Mpv17 / PMP22 family domain containing protein, expressed NCR Os12g03440 OsFBX436 - F-box domain containing protein, expressed DEPTH Os12g13640 glycosyltransferase, putative, expressed DEPTH TIL Os12g40590 helix-loop-helix DNA-binding domain containing protein, expressed TIL TIL Os12g40630 helix-loop-helix DNA-binding domain containing protein, expressed Arabidopsis AT3G61880.2 no AT5G26710.1 no AT5G48150.1 no no AT4G08685.1 no no no AT4G37970.1 no no AT2G44130.1 AT5G27660.1 no no AT3G07550.1 AT2G43500.1 AT2G37270.1 AT3G44340.1 no no no no no no AT1G11780.1 no no no AT1G67330.1 no AT5G14100.1 AT5G41040.1 no no AT5G57960.1 AT4G36390.1 no no no AT2G09990.1 no no no AT1G08810.1 no no no no no no no no no QTL q54 NST 12 12 12 12 12 12 12 12 Vị Trí 27 316 455 27 324 604 27 329 996 27 336 089 27 338 111 27 340 225 27 346 122 27 359 424 Tính trạng NR_T NR_T NR_T NR_T NR_T 27 344 135 NR_T 27 350 696 NR_T 27 361 454 NR_T Vị Trí 27 317 290 27 327 502 27 332 079 27 337 780 Gene code Os12g44050 Os12g44060 Os12g44070 Os12g44080 Chức purple acid phosphatase precursor, putative, expressed nodulin, putative, expressed nodulin, putative, expressed CHCH domain containing protein, expressed Arabidopsis no no no no Os12g44090 Os12g44100 Os12g44110 leucine-rich repeat family protein, putative, expressed peptide transporter PTR2, putative, expressed ligA, putative, expressed AT5G62710.1 no no ... VIỆN NÔNG NGHIỆP VIỆT NAM PHÙNG TH PH NG NHUNG XÁC ĐỊNH CÁC GEN - ALEN ĐẶC THÙ LIÊN QUAN ĐẾN SỰ PHÁT TRIỂN BỘ RỄ CỦA CÁC GIỐNG LÚA VIỆT NAM Chuyên ngành: Mã số: Di truyền Chọn giống trồng 62 01... 2.2.2.5 Các gen liên quan đến phát triển rễ lúa Các đột biến khác liên quan đến phát triển r cho phép xác đ nh đ ợc gen liên quan đến ch c sinh h c khác Một số gen nƠy lƠm gi m phát triển c a r cách... .10 2.2 QTLs vƠ Gen liên quan đến phát triển r lúa 12 2.2.1 Các QTLs liên quan đến phát triển r lúa 12 2.2.2 Các gen liên quan đến hình thƠnh vƠ phát triển r lúa 16 2.3 Nguyên