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Signaling pathway inhibitor library screening reveals b catenin TCF4 as a novel telomerase regulator in cancer cell lines

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SIGNALING PATHWAY INHIBITOR LIBRARY SCREENING REVEALS β-CATENIN/TCF4 AS A NOVEL TELOMERASE REGULATOR IN CANCER CELL LINES JOELLE TOH LING LING (M.SC.), NUS A THESIS SUBMITTED FOR THE DEGREE OF MASTER OF SCIENCE DEPARTMENT OF BIOCHEMISTRY NATIONAL UNIVERSITY OF SINGAPORE 2013 I Declaration page I hereby declare that the thesis is my original work and it has been written by me in its entirety I have duly acknowledged all the sources of information which have been used in the thesis This thesis has also not been submitted for any degree in any university previously _ Joelle Toh Ling Ling January 2013 II Acknowledgements I would like to express my sincere gratitude to Dr Wang Xueying (my supervisor) and Dr Zhang Yong for their scientific discussions and guidance in the project I would like to thank Institute of Molecular and Cell Biology for the sponsorship of my study, and my thesis committee: Dr Thilo Hagen, Dr Wu Qiang, Dr Liu Jianhua and Dr Luo Yan for their insightful feedback in our thesis community meetings I would also like to thank A/P Tan Tin Wee, the former acting head of the department of Biochemistry when I was a student, for taking his precious time to give me advice during my graduating years despite his busy schedule Last but not least, I would like to thank my fellow labmate Ling Li and Dr Zhang for their technical support in the telomere length assay (Figure 3.20) and Zoey for her encouragement III Table of Contents No 1.1 1.1.1 1.1.2 1.2 1.2.1 1.2.2 1.2.3 1.3 1.4 1.4.1 1.4.1.1 1.4.1.2 1.4.1.3 1.4.1.4 1.4.1.5 1.4.1.6 1.4.1.7 1.4.2 1.4.3 1.4.4 1.5 1.5.1 1.5.2 1.5.3 1.5.4 Content Title Declaration Page Acknowledgement Table of contents Summary List of Tables List of Figures List of publications for the project Introduction Telomere Telomeric DNA Telomeric protein (Shelterin) Telomerase Telomerase RNA (TER) Telomerase reverse transcriptase (TERT) Dyskerin Telomerase in human cancer hTERT regulation hTERT transcriptional regulation by diverse transcription factors and signaling pathways hTERT transcriptional regulation by Myc/Max/Mad network hTERT transcriptional regulation by Sp1 hTERT transcriptional regulation by AP-1 and Ap-2 hTERT transcriptional regulation by HIF-1 hTERT transcriptional regulation by Ets Proteins hTERT transcriptional regulation by STAT hTERT transcriptional regulation by Estrogen hTERT transcriptional regulation by epigenetic modifications hTERT regulation by alternative splicing hTERT regulation by post-translational modification Extra-telomeric functions of hTERT hTERT regulates DNA repair hTERT regulates mitochondrial functions under oxidative stress hTERT regulates apoptotic pathway hTERT regulates cell growth and proliferation Page I II III IV VII IX X XII 1 10 11 12 16 16 17 20 22 23 24 26 27 28 29 30 31 32 32 33 36 IV 1.6 1.7 1.7.1 1.7.2 2.1 2.1.1 2.1.2 2.1.3 2.1.4 2.1.5 2.2 2.2.1 2.2.2 2.2.3 2.2.4 2.2.5 2.2.6 2.2.7 2.2.8 2.2.9 2.2.10 2.2.11 2.2.12 2.2.13 3.1 3.1.1 3.1.2 3.1.3 3.1.4 3.2 3.2.1 3.2.2 3.3 3.3.1 3.3.2 3.3.3 Telomerase related screen Wnt signaling pathway Canonical Wnt pathway Non-canonical Wnt pathway Material and Methods Material Cell line Inhibitor library Plasmid List of primers List of antibodies Methods Cell Culture Wnt-3a treatment Generation of stable cell lines Real-time PCR–based version of telomere repeat amplification protocol (qTRAP) Telomerase inhibitor screen RT-qPCR Western blot β-catenin/Tcf4 complex consensus binding sequence Generation of mutants Luciferase assays Telomere length assay Electrophoretic mobility shift assay (EMSA) Chromatin immunoprecipitation (ChIP) assays Results Inhibitors screening Verification of screening platform using STAT III and IV inhibitors Wnt pathway inhibitor library screening EGFR pathway inhibitors library screening JAK/STAT pathway inhibitor library screening Validation of the positive hits from the screening experiments in MCF7 and AGS Verification for Wnt inhibitors Verification for EGFR inhibitors Mechanistic study of β-catenin/TCF on hTERT Effect of FH535 (β-catenin/TCF inhibitor) on mRNA expression of essential components of telomerase (hTERT, hTER and DKC1) and c-Myc Co-relation of TA and β-catenin expression in SW480 and SW620 Canonical Wnt/β-catenin signaling regulates TA in cancer cell via hTERT transcription regulation 38 55 55 60 61 61 61 61 64 66 67 68 68 69 69 70 71 72 73 73 74 74 75 76 76 78 78 79 81 85 89 91 91 94 96 96 99 101 V 3.3.3.1 Effect of Wnt-3a treatment on TA and mRNA level of mRNA level of essential components of telomerase (hTERT, hTER and DKC1) 3.3.3.2 Effect of lithium chloride treatment on TA and mRNA level of hTERT, hTERT 3.3.3.3 Effect of Wnt-3a and lithium chloride treatment on hTERT promoter luciferase activity 3.3.3.4 Effect of knocking down of β-catenin on TA, hTERT mRNA and hTERT (949bp) in cancer cell lines 3.3.3.5 Effect of knocking down of β-catenin on telomere length in cancer cell lines 3.3.4 Effect of over expression of β-catenin on TA, hTERT mRNA and hTERT (949bp) in cancer cell lines 3.3.5 β-catenin regulate the hTERT promoter through intereaction with TCF4 3.3.5.1 TCF is involved in β-catenin dependent hTERT transcription regulation in cancer cell lines 3.3.5.2 β-catenin/TCF4 regulate hTERT promoter in cancer cell lines 3.3.5.3 Characterization of the distal TCF4 binding site (TBE) in the human hTERT promoter 3.3.5.4 In vitro and in vivo occupancy of TCF4 on TBE in hTERT promoter Discussion References 102 105 109 111 115 120 124 124 127 132 139 144 149 VI Summary Telomerase is a ribonucleoprotein complex consisting of a reverse transcriptase protein unit (TERT) and a RNA unit (TER) Telomerase activity (TA) has been observed in ~85% of all human tumors, implying that immortality conferred by telomerase, play a key role in malignant transformation (Shay and Bacchetti 1997) Inhibition of telomerase has been shown to result in telomere-shortening, subsequent growth arrest and senescence in a wide range of tumor cell lines (Hahn et al 1999; Zhang et al 1999) The almost universal presence of telomerase in human cancers and cancer stem cells, together with its near-absence in most normal tissues make telomerase an attractive therapeutic target However mechanism of telomerase activation in cancer has yet been documented in detail and insight into the mechanism will definitely improve telomerase base cancer therapy Well-defined signaling pathway (Wnt, EGFR and JAK/STAT) inhibitors that are known to play important roles in cancer progression were screened to identify new telomerase regulators Hits from the inhibitors libraries were verified in a wide range of cancer cell lines (stomach adenocarcinoma: AGS, breast cancer: MCF7, colorectal cancer: HCT116/LS174T) and are therefore expected to be general TA inhibitors for some of the major types of cancer β-catenin/TCF4 complex was identified as a novel TA regulator from the screen and was later found to inhibit TA via transcription regulation of hTERT (human TERT) Activation of the Wnt pathway either by Wnt ligand (Wnt-3a) or LiCl (activates VII Wnt signaling by inhibiting GSK-3β) treatment as well as overexpression of a constitutively active form of β-catenin (Δ-N β-catenin) up regulated hTERT mRNA expression and telomerase activity (TA) in cancer cell lines On the other hand, knocking down of endogenous β-catenin via shRNA reduces hTERT mRNA expression and TA In addition, a β-catenin/TCF4 consensus binding sequence from -659bp to -653 bp (5’-TGCAAAG-3’) upstream of transcription start site in hTERT promoter was also found and evidences from promoter studies, electrophoretic mobility shift assay, and chromatin immunoprecipitation assay, showed that β-catenin/TCF4 bind to hTERT promoter in vivo and in vitro Taken together, this is the first study has shown that Wnt signaling regulates telomerase via the transcription regulation of hTERT VIII List of Tables
 Table no 1.1 1.2 2.1 2.2 2.3 2.4 2.5 3.1 3.2 3.3 Content List of current screening strategies published List of approaches in telomerase cancer therapy List of Wnt inhibitors examined in the screen List of EGFR inhibitors examined in the screen List of JAK/STAT inhibitors examined in the screen List of primers used in the project List of antibodies used in the project A summary of positive hits from Wnt pathway inhibitors library screening in HCT116 and LS174T List of positive hits from the EGFR pathway inhibitors library Changes on the mean telomere length of HCT116, MCF7, MCF10A and 293T cell lines in scramble shRNA or β-catenin RNA lent virus treatment IX List of Figures
 Figure no 1.1 1.2 2.1 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 3.10 3.11 3.12 3.13 3.14 3.15 3.16 Content Diagrammatic representation of a T-loop and D-loop structure of a telomere Representation of transcription factors and their binding sites on hTERT promoter hTERT plasmids that were generated STAT III and V inhibitors were able to reduce TA in HCT116 cells by 60% and 40% respectively Effect of TA by Wnt pathway inhibitors compounds A to O in HCT116 at (A) 1x IC50 and (B) 5x IC50 (except inhibitor C that was at 2.5x IC50) Effect of TA by Wnt pathway inhibitors compounds A to O in LS174T at (A) 1x IC50 and (B) 5x IC50 (except inhibitor C that was at 2.5x IC50) Effect of TA by EGFR pathway inhibitors compounds A to M in HCT116 at (A) 1x IC50 and (B) 5x IC50 Effect of TA by EGFR pathway inhibitors compounds A to M in LS174T at (A) 1x IC50 and (B) 5x IC50 Effect of TA by JAK/STAT pathway inhibitors A to D in HTC116 at 5x IC50 (A) Effect of TA by Wnt pathway inhibitors compounds B, C, F and K on MCF7 at a dose of 5x IC50 (2.5x IC50 for C) (B) Concentration dependent effect of inhibitor C (FH535) on MCF7 Effect of TA by inhibitor C (FH535) at 2.5x IC50 on AGS Effect of TA by (A) EGFR pathway inhibitor B, C, G and M on MCF7 at a dose of 5x IC50 Effect of FH535 at 2.5x IC50 on mRNA expression of core components of telomerase in (A) MCF7 (B) HCT116 (A) TA and (B) β-catenin protein levels in SW480 and SW620 cell lines Figure 3.12 Wnt3a treatment increased TA in MCF7, HCT116 and 293T (n = 3; 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(ChIP) assays Results Inhibitors screening Verification of screening platform using STAT III and IV inhibitors Wnt pathway inhibitor library screening EGFR pathway inhibitors library screening JAK/STAT... Telomerase related screen Wnt signaling pathway Canonical Wnt pathway Non-canonical Wnt pathway Material and Methods Material Cell line Inhibitor library Plasmid List of primers List of antibodies... the inhibition of ataxia telangiectasia mutated (ATM) and ATM and Rad3-related (ATR) protein kinases though detail mechanism has yet being elucidated (d''Adda di Fagagna et al 2003; Takai et al

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