Freeland - Molecular Ecology (Wiley, 2005) - Chapter 5 pdf
Freeland - Molecular Ecology (Wiley, 2005) - Chapter 5 pdf
... time.
X
Y
Z
X
Y
Z
X-1
Y
Z-1
X-2
Z-2
X
Site 2 Site 1 Site 3
X-1
Y
X-1
X-2
Y-1
Y-2
Z
Site 1 Site 2
Site 1 Site 2
Site 3
Site:
Taxon:
1
Y
1
X-1
2
X-2
1
Z-1
3
Z-2
Site:
Taxon:
1
X-1
1
X-2
2
Y-1
2
Y-2
3
Z
(a)
(b)
Figure 5. 10 The phylogenetic ... caution.
1
9
10
12
13
14
15
16
17
18
2
4
5
6
8
19
21
20
22
23
24
25
26
27
30
31
32
33
34
36
37
38
35
7
28
29
11
3
14,17,22, 25, 38
1,16,18,
21,2...
Freeland - Molecular Ecology (Wiley, 2005) - Chapter 1 pps
... slipped-strand mis-pairing, which
5
3´
5
3´
5
3´
5
3´
5
3´
5
3´
Replication fork
Figure 1 .5 During DNA replication, nucleotides are added one at a time to the strand that grows in a
5
0
to ... Microbial Methods 55 : 54 1 55 5.
Benard, M.F. 2004. Predator-induced phenotypic plasticity in organisms with complex life
histories. Annual Review of Ecology, Evolution, and Systema...
Freeland - Molecular Ecology (Wiley, 2005) - Chapter 2 doc
... I primer
5 -CTCGTAGACTGCGTACCAATTC
3‘-CATCTGACGCATGGTTAAG AATGAGTCCTGAGTAGCAG -5
T
TACTCAGGACTCA-3‘
Eco RI adaptor Mse I adaptor
5 -AATTC
3‘-G AATG -5
T
-3 ‘
DNA
Digest with
Eco RI and Mse I
Adaptor ... primer
AATG
AGTCCTGAGTAGCAG -5
T
TACTCAGGACTCA-3‘
(+n+3n)AATGAGTCCTGAGTAGCAG
Mse I primer
5 -CTCGTAGACTGCGTACCAATTC
3‘-CATCTGACGCATGGTTAAG
GACTGCGTACCAATTC(+n)
Eco RI primer
AATG
A...
Freeland - Molecular Ecology (Wiley, 2005) - Chapter 3 docx
... reproduced with
permission
Relative date
Number of alleles
0
5
10
15
20
25
30
0 25 50 75 100 1 25 150 2001 75
Figure 3.6 Linear regression of ln-relative date (sampling date represented as number of ... 0.936 0.892 0.917
H
o
0.462 0.647 0.333 0 .52 6 0 .50 0
Population 3
No. of alleles 16 12 13 12 12
H
e
0.932 0.9 05 0. 859 0.862 0.918
H
o
0.667 0.8 75 0. 750 0 .55 6 0.882
74
GENE...
Freeland - Molecular Ecology (Wiley, 2005) - Chapter 6 ppsx
... p
x
p
y
p
120 1.0 0 .5 0. 65
116 0 .5 0 0.20
118 0 .5 1.0 0. 35
Relatedness is therefore calculated as:
½ð0 :5 À 0: 65 þð0 À 0:20Þþð1 À 0: 35 =½ð1 À 0: 65 þð0 :5 À 0:20Þ
þð0 :5 À 0: 35
¼ 0:30=0:80
¼ 0:3 75
This suggests ... Daughter Father Brother Son Niece/nephew
Female 0 .5 0. 75 0 .5 0 .5 0. 25 0 .5 0.3 75
Male 1 0 .5 1 0 0 .5 0 0. 25
220
MOLECULAR APPROACHES TO BEH...
Freeland - Molecular Ecology (Wiley, 2005) - Chapter 7 pot
... important
applications of molecular ecology. There are, however, many other reasons why
molecular ecology can be considered an applied science, and some of these will be
considered in our next and final chapter.
OVERVIEW ... 4 65 A. fulgerator individuals. Morpholo-
gical characters of caterpillars and adults, plus the identity of their food
plants, were superimposed onto a neighbou...
freeland - molecular ecology (wiley, 2005)
... 142
Overview 151
Chapter summary 151
Useful websites and software 152
Further reading 153
Review questions 153
5 Phylogeography 155
What is phylogeography? 155
Molecular markers in phylogeography 155
vi ... H
e
from the
Midway population can be calculated as:
H
e
¼ 1 Àð0: 250
2
þ 0:200
2
þ 0 :55 0
2
Þ
¼ 1 Àð0:06 25 þ 0:04 þ0:30 25
¼ 0 :59 5
Similarly, H
e
from the Kauai populati...
Freeland - Molecular Ecology (Wiley, 2005) - Answer potx
... a
male-biased sex ratio, not all females will be able to defend a territory and
attract multiple mates.
6.3. ð0 :5 À 0: 45 þð0 :5 À 0 :50 Þ=ð1 À 0: 45 þð1 À 0 :50 Þ¼ð0: 05 þ 0Þ=ð0 :55 þ
0 :50 Þ¼0: 05= 1: 05 ¼ ... Biology and Ecology 303: 183 196.
El Mousadik, A. and Petit, R. J. 1996. Chloroplast DNA phylogeography of the argan tree of
Morocco. Molecular Ecology 5: 54 7 55 5.
Eml...
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