functional genomics in forest trees

... race Forestry and Forest Products Open-pollinated eucalypt family insects are the main pollinators pollen pollen pollen seed 70% outcrossed 20% selfs 10% inbred (relative mating) Forestry and Forest ... Family Plot Family Forestry and Forest Products Within-plot thinning of seed orchards Second assessment Replicate Plot Replicate Related trees adjacent - mating results in inbreeding Plot Family ... unpedigreed Forestry and Forest Products Seed production area – unpedigreed 1st thinning Forestry and Forest Products Seed production area – unpedigreed 2nd thinning Forestry and Forest Products...

Ngày tải lên: 22/06/2014, 13:20

... illustrated by a decline spiral constituted of three tiered inward rings, corresponding to the predisposing, inciting, and contributing stressing factors, respectively Decline is induced by the sequential ... recent years Signalling pathways and genes involved in resistance to pathogens have been unravelled, rst in model plants [54, 208] and increasingly in many other species, including trees [9,68,141] ... water stress (minimum predawn leaf potentials of 1.5 to MPa) was shown to be eective in increasing symptom severity, e.g inducing a two-fold increase in canker length, in various pine species [11,...

Ngày tải lên: 07/08/2014, 16:20

... 1.3 Genomics Genomics is a discipline focusing on the study of poly deoxyribonucleic acid (DNA) molecules within a single cell of an organism Genomics includes intensive efforts to determine ... stable Ds insertion line with the Ac transposase line Gene trap and enhancer trap systems were tested in rice in order to obtain stable Ds insertion lines however, there reports showing predominant ... of sequence in 2000 and completion in 2003 Hieter and Boguski in 1997 proposed the divisions of genomics into two disciplines namely structural and functional genomics The structural genomics represents...

Ngày tải lên: 14/09/2015, 14:12

... regulating secondary vascular growth can be investigated in woody plants (shrubs, trees) [20] As genetic selection and breeding activities in trees are being expanded to include genetic mapping ... tissues from two control lines (two trees per line, n = individual samples) and two PtaHB1 transgenic lines (two trees per line, n = individual samples) were compared using a 3.4 K low redundancy ... was to develop insights into the role of HD-Zip III genes in secondary xylem formation in forest trees We examined the HDZip III gene family in two unrelated tree species belonging to the angiosperms...

Ngày tải lên: 11/08/2014, 11:21

... NM_014393 ▲ 1.52 regulation of transcription protein binding double-stranded RNA binding DNA binding ▼ 5.02 protein binding NM_001149 NM_004242 ▲- increased ▼- decreased Validation of microarray ... ethanol-induced expression and activation of cytokines and chemokines in monocytes and macrophages (including Kupffer cells) [41, 42], and ethanol-induced mucosal injury in the upper gastrointestinal ... Interestingly, HMGN3 has been found to be associated with resistance against anticancer drugs including vinblastine, topotecan, paclitaxel and doxorubincin in human hepatocellular carcinoma derived...

Ngày tải lên: 31/10/2012, 15:28

... b-ketothiolase; PaaZ, unknown, putative ring-cleavage enzyme, aldehyde dehydrogenase domain (N-terminus), MaoC-like protein domain (C-terminus) PaaX and PaaY may be involved in regulation (Andover, MA, USA) ... mixtures containing 0.1 M phosphate, pH 6.5, 40 mg L-[U-13C9]phenylalanine or L-[ring-13C6]phenylalanine, 740 kBq [U-14C9]phenylalanine, and U L-amino acid oxidase (Fluka, Neu-Ulm, Germany) in a total ... mutant strains grew on succinate, but none grew on adipate Transformation of labeled phenylacetate into labeled products by the mutants Mutant cell suspensions were incubated in buffer containing traces...

Ngày tải lên: 23/03/2014, 18:20

... leafing and yellowing of leaves in selected forest trees in Slovakia Nauka za Gorata – Forest Science, 43: 29–36 SCHIEBER B., 2006b Spring phenology of European beech (Fagus sylvatica L.) in submountain ... couched in a coefficient of linear correlation (Pearson’s product moment) RESULTS During the period of phenological monitoring (1995–2007), interannual variability in the onset of two spring phenological ... hand, the shortest interphase interval leaf unfolding-autumn colouring, which represents the vegetation period of trees, was observed in lime-tree Longer vegetation period, detected in other species,...

Ngày tải lên: 07/08/2014, 10:21

... requires annotating using various bioinformatic platforms Although computer-intensive disciplines and bioinformatics allow clustering analysis for gene expression arrays and provide insight into the ... 20-century-old definition of inflammation proposed by Cornelius Celsius He defined inflammation (redness and swelling with heat and pain [rubor et tumor cum calore et dolor]) as an entity using a singular ... way that aids their interpretation Integrating various incompatible bioinformatics platforms is essential Such efforts are currently under way by the Interoperable Informatics Infrastructure Consortium,...

Ngày tải lên: 09/08/2014, 01:21

... Drosophila examined in this study Prosα6T originated in branch (Figure 1) and it is present in only nine of the sequenced genomes Prosα3T and Pros28.1A originated in branch and they are present in only ... are unknown Here, we focus on functional protein coding retrogenes in Drosophila We increased the list of known retrogenes in D melanogster by identifying retrogenes independently of the location ... that are testis- and/or male-specific in our set include Arp53D, an actin related protein expressed only in testis, gskt, a male germline-specific protein kinase required for male fertility and...

Ngày tải lên: 14/08/2014, 17:22

... proper orientation of using bioclimatic resources, spartial arrangement of areas pf producing forest trees and areas specializing in -4the growing industrial plants, medicinal plants on the territory ... continue developing the previous studies 1.3 Overview of studies on agricultural crops, forest trees Currently, many studies of forest trees, industrial trees and medicinal plants have been invested ... concentrated in Loc Binh, Huu Lung, Dinh Lap and Binh Gia districts remaining units of bioclimate-soil resources are in -less favorable level (accounting for 0.4%), which are concentrated in Bac Son...

Ngày tải lên: 29/08/2014, 15:53

... we designated the staining index of 6-9 as the ―normal‖ baseline expression of THY1 Accordingly, a staining index of 1-4 was considered as reduced expression, and a staining index of was considered ... cell line was hybridized against each of four hybrid lines (biological replicates), and in turn, each of the hybrid lines was hybridized against its corresponding segregant line B) The indicative ... filtering for narrowing down candidates Studies that rely on this principle of genomic and transcriptomic integration are generating new insights into mechanisms of human diseases including cancer...

Ngày tải lên: 11/09/2015, 09:05

... C domain is the DNA-binding domain, which consists of two zinc-finger-like motifs The D domain is a variable hinge The multifunctional C-terminal (domain E) is the ligand-dependent domain (LBD), ... Hypothalamus-pituitary-adrenal Io Ionomycin IP3 Inositol 1,4,5 triphosphate JNK C-Jun NH2-terminal kinase LB Luria Bertani LH Luteinizing hormone LHR Luteinizing hormone receptor LHβ Luteinizing hormone β-subunit ... ubiquitin-conjugating enzyme (ubc4), and calmodulin-dependent serine/threonine protein phosphatase calcineurin, both of which are up-regulated following GnRH treatment Functional studies revealed that GnRH increases...

Ngày tải lên: 11/09/2015, 21:47

... Protection forest, special-use forest, Annual forest statistics Forest Inventory and Planning Institute (FIPI) II Information needed for forest management 2.1 Demand for information on forest management ... Overview Forest administration system in Vietnam Information needed for forest management in Vietnam Application of RS in forest management in Vietnam: Past and present Future Direction I Forests ... in deriving information Application of very high resolution satellite images (SPOT 5, ALOS, IKONOS, QuickBird, etc.) in land use /forest cover mapping, forest planning, forest assessment and forestland...

Ngày tải lên: 24/01/2014, 03:20

... branches inclined to be longitudinal or spreading: leaves narrowly linear, rigid, sharp-pointed, to in long, about y8 in wide, midrib and marginal ribs prominent, cross-nerves spreading nearly ... cross-veinlets: flowering spikes creamy white (varying to pink and purple in Australia), 1% to in long, in wide, at first terminal, the axis growing out only after flowering: stamens nearly ^ in long ... overlapping, narrowly linear, acute, % to % in long, y^ in wide, apparently nerveless: flowering spikes of a rich scarlet color, cylindric, about 21/) in long and 11/2 to 1% in in diameter, forming...

Ngày tải lên: 13/02/2014, 12:20

... elders, including the use of geriatric interdisciplinary team training46 and the use of a geriatric resource nurse.47 National programs for geriatric interdisciplinary team training were created in ... Clark A Walking for wellness: a collaborative program to maintain mobility 14 Reducing Functional Decline 52 Covinsky KE, Palmer RM, Kresevic DM, et al Improving functional outcomes in older patients: ... hospitalizations in the elderly Functional Decline During Hospitalization During hospitalization, the elderly patient often experiences reduced mobility and activity levels Functional decline, including changes...

Ngày tải lên: 14/02/2014, 07:20

... remarks as to the linguistic significance of restricting the use of regular sets in the functional uncertainty machinery by showing that the linguistic theory instantiated in TAG can predict ... and Adjoining "- ~ v J A a m ~ p mat • Figure 1: Elementary Trees in a TAG We will now define the operation of adjoining Consider the adjoining of/~ at the node marked with * in a The ... to adjoining, but becomes specified upon adjoining Thus, the bottom feature structure associated with the foot node, which "is bfoot before adjoining, is instantiated on adjoining by unifying it...

Ngày tải lên: 21/02/2014, 20:20

... chain to the nucleotide-binding pocket [3] We describe the engineering, expression and purification of single-cysteine-containing proteins comprising either the C-terminal NBD or the N-terminal ... P-glycoprotein contains only a single cysteine in the Walker-A motif [43] Thus, MBP-NBD-Nter is a 75-kDa fusion protein containing a single cysteine residue located in the ATP-binding pocket The ... N-[3H]ethylmaleimide (0.6 lM, determined by liquid-scintillation counting) for increasing times at 22 °C The reaction was stopped by the addition of protein loading sample buffer containing a minimum 10-fold molar...

Ngày tải lên: 08/03/2014, 08:20

... subunits ranging from 23 to 30 kDa in size Subunits of all known GST structures exhibit a two-domain fold, the N-terminal domain and C-terminal domain, including the highly conserved GSH-binding site ... bababba, similar to the thioredoxin fold of other GSH-binding or cysteine-binding proteins The H-site is entirely helical, with a variable number of a-helices, depending on the specific enzymes [19] ... according to the method described in Lo Piero et al [11] Briefly, protein expression was achieved in a cell-free system (Expressway Plus; Invitrogen) by incubating the plasmids (15 lg), in IVPS...

Ngày tải lên: 15/03/2014, 09:20

... field of functional food research Change in the GABA content is enhanced in the germination state, so allowing time for germination during processing can help improve rice quality As shown in Fig ... absent before germination was 0.26 mg/g The decrease in the phytic acid content after germination may be attributed to leaching out into soaking water (Abdullah, Baldwin, & Minor, 1984) Other ... obtained after incineration using the Soxhelt method (AOAC, 963.15) 2.3 Analysis of free sugars Free sugars were analysed by extracting g of homogenised sample in 20 ml water for 10 min, filtering...

Ngày tải lên: 15/03/2014, 15:42

... expression in testis MUF1 is a leucine rich repeat containing protein that, interestingly, also contains a BC-box that serves as a linker in multicomponent, cullin 5-based ubiquitin ligases This ... into the functional protein, stabilize the structure, or lead to protein misfolding It also measures protein–protein interactions, interactions switching on and off ion channels, ligand- or inhibitor-binding, ... displaying distinct differences in preference despite only small differences in structure of binding site In vitro and in silico mutants were constructed in order to analyze the principles driving...

Ngày tải lên: 16/03/2014, 01:20