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molecular biomineralization aquatic organisms forming extraordinary materials

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  • Cover

  • Frontmatter

    • Preface

    • Contents

    • Contributors

  • Part I: Metallic Biominerals

    • Chapter 1: Magnetite Biomineralization in Bacteria

      • 1.1 Introduction

      • 1.2 Magnetotactic Bacteria

        • 1.2.1 Ecology

        • 1.2.2 Diversity

        • 1.2.3 Genetics

        • 1.2.4 Cell Biology

      • 1.3 Magnetosomes

        • 1.3.1 Magnetite Biomineralization Pathway

          • 1.3.1.1 Iron Source

          • 1.3.1.2 Iron Uptake and Transport

          • 1.3.1.3 Magnetite Formation

        • 1.3.2 Why Are Magnetosomes an Extraordinary Material?

          • 1.3.2.1 Magnetosome Structure

          • 1.3.2.2 Magnetosome Dimensions

          • 1.3.2.3 Magnetosome Morphologies

          • 1.3.2.4 Magnetosome Chain Assembly and Chain Function

      • 1.4 Applications of Magnetosomes

      • 1.5 Conclusion and Outlook

      • References

    • Chapter 2: Maxi- and Mini-Ferritins: Minerals and Protein Nanocages

      • 2.1 Introduction

      • 2.2 Ferritin Distribution in Organisms of Land and Sea

        • 2.2.1 Ferritin in Prokaryotes

        • 2.2.2 Ferritin in Eukaryotes

        • 2.2.3 Conservation of Active Sites in Ferritins of Prokaryotes and Eukaryotes

      • 2.3 Ferritin Iron Biomineral Formation

        • 2.3.1 Step i. Fe(II) Entry and Binding

        • 2.3.2 Step ii. O2 or H2O2 Binding and Formation of Transition Intermediates

        • 2.3.3 Step iii. Release of Differric Oxo Mineral Precursors from Active Sites

        • 2.3.4 Step iv. Nucleation and Mineralization

      • 2.4 Ferritin Iron Biominerals

      • 2.5 Ferritin Iron Biomineral Dissolution

        • 2.5.1 Perspectives

      • References

    • Chapter 3: Manganese Oxidation by Bacteria: Biogeochemical Aspects

      • 3.1 Introduction

      • 3.2 Importance of Manganese

      • 3.3 Biogeochemistry of Manganese

      • 3.4 Effect of Salinity on Manganese Oxidation

      • 3.5 Toxicity of Manganese in the Presence of Other Metals

      • 3.6 Manganese Oxidation by Marine Bacteria

      • 3.7 Manganese Oxidation by Freshwater Bacteria

      • 3.8 Manganese Oxidation: A Genomic Perspective

      • 3.9 Manganese Oxidation: A Proteomic Perspective

      • 3.10 Molecular Biomineralization

      • 3.11 Biotechnological Applications of Manganese Oxidation

      • 3.12 Conclusion

      • References

    • Chapter 4: Molecular Biomineralization: Toward an Understanding of the Biogenic Origin of Polymetallic Nodules, Seamount Crusts, and Hydr

      • 4.1 Introduction

      • 4.2 Discovery

      • 4.3 Principles of Biomineralization in Marine Ore

      • 4.4 Mineralization/Biomineralization Processes During Formation of Polymetallic Nodules [Mn-Nodules]: Biologically Induced Mineralization

        • 4.4.1 Deposits

        • 4.4.2 Growth

        • 4.4.3 Microorganisms

        • 4.4.4 Bio-seeds

        • 4.4.5 Seeds: Bacterial S-Layer

        • 4.4.6 Biofilm Structures in Polymetallic Nodules

        • 4.4.7 Mineral Deposition

        • 4.4.8 Approach to Determine Bacteria Species in the Mineralic Material

        • 4.4.9 Manganese Depositing Bacteria

      • 4.5 Mineralization/Biomineralization Processes During Formation of (Co-rich) Polymetallic Crusts

        • 4.5.1 Deposits

        • 4.5.2 Morphology of the Crusts

        • 4.5.3 Growth

        • 4.5.4 Coccolithophores

        • 4.5.5 Elemental Mapping

        • 4.5.6 Bio-seeds

      • 4.6 Mineralization/Biomineralization Processes During Formation of Hydrothermal Vents

      • 4.7 Toward a Molecular Biomineralization

      • References

  • Part II: Biocalcium

    • Chapter 5: Molecular Basis of Bacterial Calcium Carbonate Precipitation

      • 5.1 Introduction

      • 5.2 General Features of Bacterial Calcium Carbonate Mineralization

        • 5.2.1 Calcium Carbonate Mineralization Terms and Processes

        • 5.2.2 General Features of Bacterial CaCO3 Mineralization

        • 5.2.3 Bacterial CC Minerals

      • 5.3 Bacterial Metabolism and Precipitation

        • 5.3.1 Role of Bacterial Metabolism on Calcium Carbonate Precipitation

        • 5.3.2 Role of Calcium Carbonate Precipitation in Bacterial Metabolism

          • 5.3.2.1 Role of Calcium Ions in the Cell and Bacterial Calcium Metabolism

          • 5.3.2.2 Evolution and Meaning of CC Mineralization By Organisms

      • 5.4 Cell Surface Structures and Precipitation

      • 5.5 Conclusions

      • References

    • Chapter 6: Principles of Calcium-Based Biomineralization

      • 6.1 Calcium-Based Biominerals in Aquatic Organisms

        • 6.1.1 Calcium Carbonate

          • 6.1.1.1 Calcite and Aragonite

            • Mollusc Shell

            • Sensor

            • Calcitic Microlenses in Brittlestar

          • 6.1.1.2 Vaterite

          • 6.1.1.3 Calcium Carbonate - Amorphous Phase

        • 6.1.2 Calcium Phosphate

          • 6.1.2.1 Bone

          • 6.1.2.2 Tooth

      • 6.2 Hierarchical Structure of Calcium Carbonate-Based Biomineral in Aquatic Organisms

        • 6.2.1 Carp Otolith

          • 6.2.1.1 Hierarchical Structure of Lapillus

          • 6.2.1.2 Hierarchical Structure of Sagitta

          • 6.2.1.3 Hierarchical Structure of Asteriscus

        • 6.2.2 Hierarchical Structure of Nacreous Layer in Mollusc Shells

        • 6.2.3 Lackluster Pearl

        • 6.2.4 Crab (Meyers et al. 2008)

      • 6.3 Hierarchical Structure of Calcium Phosphate-Based Biomineral

        • 6.3.1 Zebrafish Bone

        • 6.3.2 Tooth

      • 6.4 Study on the Principles of Calcium Carbonate Mineralization

        • 6.4.1 Effects of Additives on Calcium Carbonate Mineralization

          • 6.4.1.1 Soluble Matrices (SM) in the Solution as Additives

          • 6.4.1.2 Amino Acids in the Solution as Additives

          • 6.4.1.3 Magnesium Ions and Collagen in Solution as Additives

        • 6.4.2 Effects of Templates on Calcium Carbonate Mineralization

          • 6.4.2.1 Natural Biomineral Template

          • 6.4.2.2 Amino Acid Template

          • 6.4.2.3 Modified Single Crystal Silicon Template

      • 6.5 Principles of Calcium Phosphate Mineralization

        • 6.5.1 Collagen-Induced Calcium Phosphate Mineralization

        • 6.5.2 Peptide-Amphiphilic Nanofibers-Induced Calcium Phosphate Mineralization

      • References

    • Chapter 7: Molecular Aspects of Biomineralization of the Echinoderm Endoskeleton

      • 7.1 Introduction

      • 7.2 Formation of the Endoskeleton in the Embryo

        • 7.2.1 Spicule Formation

        • 7.2.2 Calcium

        • 7.2.3 Occluded Proteins

        • 7.2.4 Formation of Postembryonic Skeletal Elements

        • 7.2.5 Recent Work on the Structure and Composition of the Embryonic Spicule

      • 7.3 ACC: Discovery, Importance, and Implications in Other Systems

      • 7.4 Recent Work on the Adult Spine

      • 7.5 Recent Work on the Adult Tooth

        • 7.5.1 The Mineral Structure of the Sea Urchin Tooth

        • 7.5.2 Matrix Proteins of the Tooth

      • 7.6 Generalizations

      • References

    • Chapter 8: Echinoderms as Blueprints for Biocalcification: Regulation of Skeletogenic Genes and Matrices

      • 8.1 The Basis of Biomineral Formation

      • 8.2 Biomineral Contents and Shapes

      • 8.3 Cells Involved in Adult Echinoderms Biomineralization

        • 8.3.1 Biomineral Formation and Regenerative Events

      • 8.4 Cellular Signaling and Biomineral Formation in the Sea Urchin Embryo

        • 8.4.1 Extracellular Matrix

        • 8.4.2 Growth Factors

      • 8.5 Ecotoxicological Approaches to the Study of Skeletogenesis

        • 8.5.1 Metals Affecting Biomineralization

        • 8.5.2 Ionizing Radiations

        • 8.5.3 Impacts of Ocean Acidification on Biocalcification

      • 8.6 Concluding Remarks

      • References

  • Part III: Biosilica - and its Application

    • Chapter 9: The Unique Invention of the Siliceous Sponges: Their Enzymatically Made Bio-Silica Skeleton

      • 9.1 Introduction

      • 9.2 The Key Innovation During the Proterozoic: The Skeleton of Metazoa

        • 9.2.1 Proterozoic, Silica-Rich Ocean

        • 9.2.2 Emergence of the Animal Organic Hard Skeletons

      • 9.3 Well-Preserved Fossils in Body Preservation at the Ediacaran/Lower Cambrian Border: The Siliceous Sponges from Chengjiang

      • 9.4 Morphology and Synthesis of Spicules in Demosponges

      • 9.5 Morphology and Synthesis of Spicules in Hexactinellids

      • 9.6 Phases of Silica Deposition During Spicule Formation Along the Proteinaceous Filament

      • 9.7 Silicatein: Emergence of one Protein Allowed the Establishment of an Organized Body Plan in Sponges

      • 9.8 Catabolic Enzyme: Silicase

      • 9.9 Biosintering

      • 9.10 Implication of the DUF Protein in the Axis Formation

      • 9.11 Final Remarks

      • References

    • Chapter 10: Biosilica-Based Strategies for Treatment of Osteoporosis and Other Bone Diseases

      • 10.1 Introduction

      • 10.2 Bone Formation

      • 10.3 Silicon Chemistry

      • 10.4 Biosilica

      • 10.5 Silicatein

      • 10.6 Silicon Metabolism

      • 10.7 Silicon and Bone Formation

      • 10.8 Effect of Biosilica on Cell Proliferation

      • 10.9 Effect of Biosilica on HA Formation

      • 10.10 Osteoinductive Index

      • 10.11 Effect of Biosilica on Gene Expression

      • 10.12 The RANK/RANKL/OPG System

      • 10.13 Effect of Biosilica on OPG and RANKL Expression

      • 10.14 Effect of Biosilica on BMP-2 and TRAP Expression

      • 10.15 Silicon Supplementation and Silicon-Containing Implant Materials

      • 10.16 Concluding Remarks

      • References

  • Part IV: Nacre

    • Chapter 11: Structure and Function of Matrix Proteins and Peptides in the Biomineral Formation in Crustaceans

      • 11.1 Introduction

      • 11.2 Molting and Calcification

      • 11.3 Identification of Matrix Proteins in the Tissues for Temporary Storage of Calcium Carbonate

      • 11.4 Identification of Matrix Peptides and Proteins in Exoskeleton

      • 11.5 Structure-Activity Relationship of a Cuticle Matrix Peptide

      • 11.6 Regulation of Amorphous Calcium Carbonate

      • 11.7 Conclusion

      • References

    • Chapter 12: Molecular Approaches to Understand Biomineralization of Shell Nacreous Layer

      • 12.1 Introduction

      • 12.2 The Structure of the Nacreous Layer

      • 12.3 Nacreous Organic Matrix

        • 12.3.1 Chitin

        • 12.3.2 Matrix Proteins

          • 12.3.2.1 General Features

            • Predominant Amino Acids

            • Sequence Repeats and Modular Structure

            • Acting as a Protein Complex

            • Posttranslational Modifications

            • Distribution Differences

          • 12.3.2.2 Framework Proteins

          • 12.3.2.3 Regulative Proteins

            • Proteins from Pearl Oyster Nacre

            • Proteins from Abalone

      • 12.4 Function of Matrix Proteins

        • 12.4.1 Constructing the Organic Framework

        • 12.4.2 Controlling the Nucleation and Growth of Crystals

        • 12.4.3 Calcium Carbonate Polymorph Specificity

        • 12.4.4 Pearl Quality

      • 12.5 The Molecular Mechanism Involved in Nacreous Biomineralization

        • 12.5.1 The Nucleation and Growth of Aragonite Crystal

        • 12.5.2 The Orientation of Crystal Growth

      • 12.6 Conclusion

      • References

    • Chapter 13: Acidic Shell Proteins of the Mediterranean Fan Mussel Pinna nobilis

      • 13.1 Biomineralization of the Molluscan Shell, a Brief Overview of the Mechanism

      • 13.2 Pinna nobilis, a Model for Understanding Molluscan Shell Formation

        • 13.2.1 Presentation of Pinna nobilis

        • 13.2.2 Physiology, Development, and Reproduction of Pinna nobilis

        • 13.2.3 Systematic Position of Pinna nobilis and Ancestry of the Pinnid Family

      • 13.3 Shell Formation Process

        • 13.3.1 Shell Growth

        • 13.3.2 Shell Microstructures

        • 13.3.3 The Calcitic Prisms of Pinna nobilis

        • 13.3.4 Ultrastructure of the Prisms of P. nobilis and Complexity of the Organo-mineral Interactions

        • 13.3.5 The Prism/Nacre Transition and the Nacreous Layer

        • 13.3.6 Minor Elements in Prisms and Nacre

      • 13.4 The Shell Matrices of Pinna sp. and of Pinna nobilis

        • 13.4.1 Early Biochemical Studies

        • 13.4.2 Electrophoresis and Serology on the Shell Matrix of Pinna nobilis

        • 13.4.3 Molecular Data on the Shell of P. nobilis

          • 13.4.3.1 Molecular Data on the Prisms

          • 13.4.3.2 Molecular Data on the Nacre

          • 13.4.3.3 Other Shell Proteins of P. nobilis

        • 13.4.4 Effect of the Acidic Proteins of P. nobilis on ``Calcification,´´ Sensu Lato

          • 13.4.4.1 ``Classical´´ Biochemical Effects

          • 13.4.4.2 ``Nonclassical Effects´´ of Acidic Proteins of P. nobilis: Effects at the Crystal Lattice Level

      • 13.5 Putative Functions of P. nobilis Shell Proteins: Toward a Dynamic View of the Shell Fabrication

        • 13.5.1 The Prismatic Layer

        • 13.5.2 The Nacreous Layer

      • 13.6 Conclusion

      • References

  • Index

Nội dung

[...]... knowledge of magnetite biomineralization in these bacteria We highlight the extraordinary properties of magnetosomes and some resulting potential applications D Faivre (*) Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, Wissenschaftspark Golm, Potsdam 14424, Germany e-mail: damien.faivre@mpikg.mpg.de W.E.G M€ller (ed.), Molecular Biomineralization, Progress in Molecular u and... marine calcite -forming unicellular organisms have been shown to be able to regulate pH above 9 within intracellular vesicles (de Nooijer et al 2009) This finding suggests that other single-cell aquatic organisms, and therefore MTB, may be able to regulate pH within this range Two alternative magnetosome formation pathways have been proposed since the discovery of bacterial magnetite biomineralization. .. non-magnetotactic organisms, require micromolar levels for growth, yet many aquatic environments provide much less Thus, organisms have developed means to accumulate the necessary amounts of iron from their respective environments (Sandy and Butler 2009) Natural MTB habitats are freshwater or marine sediments with typically micromolar concentrations of soluble iron (Flies et al 2005) Due to the biomineralization. .. adhesion (Arakaki et al 2003) All these approaches give us a first glimpse in comprehending the molecular basis of magnetite biomineralization, but many details remain poorly understood 1.3 Magnetosomes As only magnetite -forming bacteria have been obtained in axenic culture so far, our knowledge about the chemistry, molecular biology, and genetics has mainly been obtained from these strains Future studies... Since then, the subject of magnetosome biomineralization has evolved into an interdisciplinary and unique field of research The aim of this review is to give a broad overview of the current state of knowledge on the bacteria with an emphasis on the materials that are formed Thus, we will point out the given properties that make this material so special, and explain the molecular processes that enable such... strengthening of tissues (Frankel and Blakemore 1991) and hardening of teeth (Lowenstam 1967) One of the most intriguing examples for the aquatic biomineralization of iron oxides and biomineral formation, in general, is represented by the synthesis of magnetic minerals in prokaryotes Biomineralization has been divided into two distinct fields: Extracellularly bio-induced formation (Frankel and Bazylinski 2003)... geomagnetic navigation in their aquatic habitats (Bazylinski and Frankel 2004) The magnetosomes comprise membrane-enveloped, nano-sized crystals of either the magnetic iron oxide magnetite, Fe3O4 (Frankel et al 1979) or the magnetic iron sulfide greigite, Fe3S4 (Farina et al 1990; Mann et al 1990) The magnetosomes are arranged in one or more intracellular chains by a recently discovered molecular mechanism (Komeili... magnetosome organelle, which is achieved by a high degree of control over the biomineralization of perfectly shaped and sized magnetic crystals Moreover, in MTB this process also includes the assembly into hierarchically structured chains to serve most efficiently as a magnetic field actuator The unique characteristics of magnetosome biomineralization have attracted multidisciplinary interest and might be... Biology 52, DOI 10.1007/978-3-642-21230-7_1, # Springer-Verlag Berlin Heidelberg 2011 3 4 1.1 J Baumgartner and D Faivre Introduction Iron biominerals are formed by a broad range of terrestrial and aquatic organisms, in which they serve various functions The best known function is magnetoreception, i.e., the ability to detect a magnetic field (Johnsen and Lohmann 2005) Magnetite-based magnetoreception... et al 1990; Rodgers et al 1990) (Table 1.1) 1.2.3 Genetics To understand what distinguishes magnetotactic bacteria from non-magnetotactic species, their molecular biology and genetics have been studied in recent years, providing new insights into biomineralization Genetic information has been obtained from the freshwater species M magneticum (Matsunaga et al 2005), M gryphiswaldense (Ullrich et al . Mu ¨ ller and M.A. Grachev (Eds.) Werner E.G. Mu ¨ ller Editor Molecular Biomineralization Aquatic Organisms Forming Extraordinary Materials Editor Prof.Dr. Werner E.G. Mu ¨ ller Universita ¨ t. prokaryotic and eukaryotic organisms. This book of the series Progress in Molecular and Subcellular Biology gives a survey on the most recent developments in the field of Molecular Biomineralization high- lighting. phosphate biominerals in a variety of aquatic (invertebrate and vertebrate) organisms. Special emphasis is on the role of organic matrix proteins in the biomineralization of the Echinoderm calcite

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