Chapter 7: Molecular Aspects of Biomineralization of the Echinoderm Endoskeleton
7.1 Introduction
7.2 Formation of the Endoskeleton in the Embryo
7.2.1 Spicule Formation
7.2.2 Calcium
7.2.3 Occluded Proteins
7.2.4 Formation of Postembryonic Skeletal Elements
7.2.5 Recent Work on the Structure and Composition of the Embryonic Spicule
7.3 ACC: Discovery, Importance, and Implications in Other Systems
7.4 Recent Work on the Adult Spine
7.5 Recent Work on the Adult Tooth
7.5.1 The Mineral Structure of the Sea Urchin Tooth
7.5.2 Matrix Proteins of the Tooth
7.6 Generalizations
References
Chapter 8: Echinoderms as Blueprints for Biocalcification: Regulation of Skeletogenic Genes and Matrices
8.1 The Basis of Biomineral Formation
8.2 Biomineral Contents and Shapes
8.3 Cells Involved in Adult Echinoderms Biomineralization
8.3.1 Biomineral Formation and Regenerative Events
8.4 Cellular Signaling and Biomineral Formation in the Sea Urchin Embryo
8.4.1 Extracellular Matrix
8.4.2 Growth Factors
8.5 Ecotoxicological Approaches to the Study of Skeletogenesis
8.5.1 Metals Affecting Biomineralization
8.5.2 Ionizing Radiations
8.5.3 Impacts of Ocean Acidification on Biocalcification
8.6 Concluding Remarks
References
Part III: Biosilica - and its Application
Chapter 9: The Unique Invention of the Siliceous Sponges: Their Enzymatically Made Bio-Silica Skeleton
9.1 Introduction
9.2 The Key Innovation During the Proterozoic: The Skeleton of Metazoa
9.2.1 Proterozoic, Silica-Rich Ocean
9.2.2 Emergence of the Animal Organic Hard Skeletons
9.3 Well-Preserved Fossils in Body Preservation at the Ediacaran/Lower Cambrian Border: The Siliceous Sponges from Chengjiang
9.4 Morphology and Synthesis of Spicules in Demosponges
9.5 Morphology and Synthesis of Spicules in Hexactinellids
9.6 Phases of Silica Deposition During Spicule Formation Along the Proteinaceous Filament
9.7 Silicatein: Emergence of one Protein Allowed the Establishment of an Organized Body Plan in Sponges
9.8 Catabolic Enzyme: Silicase
9.9 Biosintering
9.10 Implication of the DUF Protein in the Axis Formation
9.11 Final Remarks
References
Chapter 10: Biosilica-Based Strategies for Treatment of Osteoporosis and Other Bone Diseases
10.1 Introduction
10.2 Bone Formation
10.3 Silicon Chemistry
10.4 Biosilica
10.5 Silicatein
10.6 Silicon Metabolism
10.7 Silicon and Bone Formation
10.8 Effect of Biosilica on Cell Proliferation
10.9 Effect of Biosilica on HA Formation
10.10 Osteoinductive Index
10.11 Effect of Biosilica on Gene Expression
10.12 The RANK/RANKL/OPG System
10.13 Effect of Biosilica on OPG and RANKL Expression
10.14 Effect of Biosilica on BMP-2 and TRAP Expression
10.15 Silicon Supplementation and Silicon-Containing Implant Materials
10.16 Concluding Remarks
References
Part IV: Nacre
Chapter 11: Structure and Function of Matrix Proteins and Peptides in the Biomineral Formation in Crustaceans
11.1 Introduction
11.2 Molting and Calcification
11.3 Identification of Matrix Proteins in the Tissues for Temporary Storage of Calcium Carbonate
11.4 Identification of Matrix Peptides and Proteins in Exoskeleton
11.5 Structure-Activity Relationship of a Cuticle Matrix Peptide
11.6 Regulation of Amorphous Calcium Carbonate
11.7 Conclusion
References
Chapter 12: Molecular Approaches to Understand Biomineralization of Shell Nacreous Layer
12.1 Introduction
12.2 The Structure of the Nacreous Layer
12.3 Nacreous Organic Matrix
12.3.1 Chitin
12.3.2 Matrix Proteins
12.3.2.1 General Features
Predominant Amino Acids
Sequence Repeats and Modular Structure
Acting as a Protein Complex
Posttranslational Modifications
Distribution Differences
12.3.2.2 Framework Proteins
12.3.2.3 Regulative Proteins
Proteins from Pearl Oyster Nacre
Proteins from Abalone
12.4 Function of Matrix Proteins
12.4.1 Constructing the Organic Framework
12.4.2 Controlling the Nucleation and Growth of Crystals
12.4.3 Calcium Carbonate Polymorph Specificity
12.4.4 Pearl Quality
12.5 The Molecular Mechanism Involved in Nacreous Biomineralization
12.5.1 The Nucleation and Growth of Aragonite Crystal
12.5.2 The Orientation of Crystal Growth
12.6 Conclusion
References
Chapter 13: Acidic Shell Proteins of the Mediterranean Fan Mussel Pinna nobilis
13.1 Biomineralization of the Molluscan Shell, a Brief Overview of the Mechanism
13.2 Pinna nobilis, a Model for Understanding Molluscan Shell Formation
13.2.1 Presentation of Pinna nobilis
13.2.2 Physiology, Development, and Reproduction of Pinna nobilis
13.2.3 Systematic Position of Pinna nobilis and Ancestry of the Pinnid Family
13.3 Shell Formation Process
13.3.1 Shell Growth
13.3.2 Shell Microstructures
13.3.3 The Calcitic Prisms of Pinna nobilis
13.3.4 Ultrastructure of the Prisms of P. nobilis and Complexity of the Organo-mineral Interactions
13.3.5 The Prism/Nacre Transition and the Nacreous Layer
13.3.6 Minor Elements in Prisms and Nacre
13.4 The Shell Matrices of Pinna sp. and of Pinna nobilis
13.4.1 Early Biochemical Studies
13.4.2 Electrophoresis and Serology on the Shell Matrix of Pinna nobilis
13.4.3 Molecular Data on the Shell of P. nobilis
13.4.3.1 Molecular Data on the Prisms
13.4.3.2 Molecular Data on the Nacre
13.4.3.3 Other Shell Proteins of P. nobilis
13.4.4 Effect of the Acidic Proteins of P. nobilis on ``Calcification,´´ Sensu Lato
13.4.4.1 ``Classical´´ Biochemical Effects
13.4.4.2 ``Nonclassical Effects´´ of Acidic Proteins of P. nobilis: Effects at the Crystal Lattice Level
13.5 Putative Functions of P. nobilis Shell Proteins: Toward a Dynamic View of the Shell Fabrication
13.5.1 The Prismatic Layer
13.5.2 The Nacreous Layer
13.6 Conclusion
References
Index
Nội dung
[...]... knowledge of magnetite biomineralization in these bacteria We highlight the extraordinary properties of magnetosomes and some resulting potential applications D Faivre (*) Department of Biomaterials, Max Planck Institute of Colloids and Interfaces, Wissenschaftspark Golm, Potsdam 14424, Germany e-mail: damien.faivre@mpikg.mpg.de W.E.G M€ller (ed.), Molecular Biomineralization, Progress in Molecular u and... marine calcite -forming unicellular organisms have been shown to be able to regulate pH above 9 within intracellular vesicles (de Nooijer et al 2009) This finding suggests that other single-cell aquatic organisms, and therefore MTB, may be able to regulate pH within this range Two alternative magnetosome formation pathways have been proposed since the discovery of bacterial magnetite biomineralization. .. non-magnetotactic organisms, require micromolar levels for growth, yet many aquatic environments provide much less Thus, organisms have developed means to accumulate the necessary amounts of iron from their respective environments (Sandy and Butler 2009) Natural MTB habitats are freshwater or marine sediments with typically micromolar concentrations of soluble iron (Flies et al 2005) Due to the biomineralization. .. adhesion (Arakaki et al 2003) All these approaches give us a first glimpse in comprehending the molecular basis of magnetite biomineralization, but many details remain poorly understood 1.3 Magnetosomes As only magnetite -forming bacteria have been obtained in axenic culture so far, our knowledge about the chemistry, molecular biology, and genetics has mainly been obtained from these strains Future studies... Since then, the subject of magnetosome biomineralization has evolved into an interdisciplinary and unique field of research The aim of this review is to give a broad overview of the current state of knowledge on the bacteria with an emphasis on the materials that are formed Thus, we will point out the given properties that make this material so special, and explain the molecular processes that enable such... strengthening of tissues (Frankel and Blakemore 1991) and hardening of teeth (Lowenstam 1967) One of the most intriguing examples for the aquaticbiomineralization of iron oxides and biomineral formation, in general, is represented by the synthesis of magnetic minerals in prokaryotes Biomineralization has been divided into two distinct fields: Extracellularly bio-induced formation (Frankel and Bazylinski 2003)... geomagnetic navigation in their aquatic habitats (Bazylinski and Frankel 2004) The magnetosomes comprise membrane-enveloped, nano-sized crystals of either the magnetic iron oxide magnetite, Fe3O4 (Frankel et al 1979) or the magnetic iron sulfide greigite, Fe3S4 (Farina et al 1990; Mann et al 1990) The magnetosomes are arranged in one or more intracellular chains by a recently discovered molecular mechanism (Komeili... magnetosome organelle, which is achieved by a high degree of control over the biomineralization of perfectly shaped and sized magnetic crystals Moreover, in MTB this process also includes the assembly into hierarchically structured chains to serve most efficiently as a magnetic field actuator The unique characteristics of magnetosome biomineralization have attracted multidisciplinary interest and might be... Biology 52, DOI 10.1007/978-3-642-21230-7_1, # Springer-Verlag Berlin Heidelberg 2011 3 4 1.1 J Baumgartner and D Faivre Introduction Iron biominerals are formed by a broad range of terrestrial and aquatic organisms, in which they serve various functions The best known function is magnetoreception, i.e., the ability to detect a magnetic field (Johnsen and Lohmann 2005) Magnetite-based magnetoreception... et al 1990; Rodgers et al 1990) (Table 1.1) 1.2.3 Genetics To understand what distinguishes magnetotactic bacteria from non-magnetotactic species, their molecular biology and genetics have been studied in recent years, providing new insights into biomineralization Genetic information has been obtained from the freshwater species M magneticum (Matsunaga et al 2005), M gryphiswaldense (Ullrich et al . Mu ¨ ller and M.A. Grachev (Eds.) Werner E.G. Mu ¨ ller Editor Molecular Biomineralization Aquatic Organisms Forming Extraordinary Materials Editor Prof.Dr. Werner E.G. Mu ¨ ller Universita ¨ t. prokaryotic and eukaryotic organisms. This book of the series Progress in Molecular and Subcellular Biology gives a survey on the most recent developments in the field of Molecular Biomineralization high- lighting. phosphate biominerals in a variety of aquatic (invertebrate and vertebrate) organisms. Special emphasis is on the role of organic matrix proteins in the biomineralization of the Echinoderm calcite