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Allosteric and binding properties of Asp1–Glu382 truncated recombinant human serum albumin an optical and NMR spectroscopic investigation Gabriella Fanali 1 , Giorgio Pariani 1 , Paolo Ascenzi 2,3 and Mauro Fasano 1 1 Dipartimento di Biologia Strutturale e Funzionale, Universita ` dell’Insubria, Busto Arsizio, Italy 2 Istituto Nazionale per le Malattie Infettive IRCCS ‘Lazzaro Spallanzani’, Roma, Italy 3 Laboratorio Interdisciplinare di Microscopia Elettronica, Universita ` Roma Tre, Roma, Italy Human serum albumin (HSA), the most prominent protein in plasma, is best known for its exceptional ligand-binding capacity, the most strongly bound com- pounds being hydrophobic organic anions of medium size, long-chain fatty acids, heme, and bilirubin. More- over, HSA abundance (its concentration being 45 mgÆmL )1 in serum of healthy human adults) makes it an important determinant of the pharmacokinetic behavior of many drugs. HSA also accounts for most of the antioxidant capacity of human serum. Further- more, HSA participates in heme iron reuptake follow- ing hemolytic events, acts as an NO depot, and displays (pseudo)enzymatic properties [1,2]. The amino acid sequence of HSA shows three homologous domains, probably arising from divergent evolution of a degenerated ancestral gene followed by a fusion event. Terminal regions of sequential domains contribute to the formation of interdomain helices linking domain I to domain II, and domain II to domain III, respectively. On the other hand, each domain is known to be composed of two separate sub- domains (named A and B), connected by a random coil. The multidomain structural organization of HSA provides a variety of ligand-binding sites (Fig. 1) [1–5]. Among them, two main drug-binding regions have been identified, and named as Sudlow’s sites [6]. Keywords human serum albumin; ibuprofen; nuclear magnetic relaxation dispersion; truncated human serum albumin; warfarin Correspondence M. Fasano, Dipartimento di Biologia Strutturale e Funzionale, Universita ` dell’Insubria, Via A. da Giussano, 12, I-21052 Busto Arsizio (VA), Italy Fax: +39 0331 339459 Tel: +39 0331 339450 E-mail: mauro.fasano@uninsubria.it (Received 10 October 2008, revised 29 December 2008, accepted 6 February 2009) doi:10.1111/j.1742-4658.2009.06952.x Human serum albumin (HSA) is known for its exceptional ligand-binding capacity; indeed, its modular domain organization provides a variety of ligand-binding sites. Its flexible modular structure involves more than the immediate vicinity of the binding site(s), affecting the ligand-binding prop- erties of the whole protein. Here, biochemical characterization by 1 H-NMR relaxometry and optical spectroscopy of a truncated form of HSA (tHSA) encompassing domains I and II (Asp1–Glu382) is reported. Removal of the C-terminal domain III results in a number of contacts that involve domain I (containing the heme site) and domain II (containing the warfarin site) being lost; however, the allosteric linkage between heme and warfarin sites is maintained. tHSA shows a nuclear magnetic relaxation dis- persion profile similar to that of HSA, and displays increased affinity for ibuprofen, warfarin, and heme, suggesting that the fold is preserved. More- over, the allosteric properties that make HSA a peculiar monomeric protein and account for the regulation of ligand-binding modes by heterotropic interactions are maintained after removal of domain III. Therefore, tHSA is a valuable model with which to investigate allosteric properties of HSA, allowing independent analysis of the linkages between different drug-binding sites. Abbreviations HSA, human serum albumin; NMRD, nuclear magnetic relaxation dispersion; tHSA, truncated human serum albumin; ZFS, zero field splitting. FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 2241 Ibuprofen, a nonsteroidal anti-inflammatory agent, and warfarin, a coumarinic anticoagulant drug, are considered to be stereotypical ligands for Sudlow’s site II and Sudlow’s site I, respectively. Warfarin binds to Sudlow’s site I with K d = 3.0 · 10 )6 m, in a pocket formed by the packing of all six helices of subdomain IIA [3,7–9]. The interac- tion between warfarin and HSA appears to be domi- nated by hydrophobic contacts, although specific electrostatic interactions are observed. Ibuprofen binds primarily to Sudlow’s site II, with K d = 1.8 · 10 )6 m [3,10,11]. Site II is composed of all six helices of sub- domain IIIA, and it is topologically similar to site I, with the exception that it may accommodate two fatty acid anions. A secondary ibuprofen site has been located at the interface between subdomains IIA and IIB [12]. Moreover, multiple recognition sites for drug, fatty acid and hormone binding to HSA have also been identified [1,2,8,12,13]. Heme endows HSA with peculiar optical and mag- netic spectroscopic properties, which can be used to investigate ligand-dependent and pH-dependent struc- tural properties [9,14–19]. Heme binds to HSA in a D-shaped cavity limited by Tyr138 and Tyr161, which provide p–p stacking interactions with the porphyrin; Tyr161 supplies a donor oxygen to the ferric heme iron, forming a pentacoordinate high-spin system [20]. Heme propionates point towards the interface between domains I and III, and are stabilized by salt bridges with Arg114 and Lys190 residues [21,22]. Interestingly, the heme site of HSA has a low affinity for long-chain and medium-chain fatty acids, suggesting that its geometry has evolved to specifically bind to the heme [23,24]. The conformational adaptability of HSA involves more than the immediate vicinity of the binding site(s), affecting both the structure and the ligand-binding properties of the whole HSA molecule, which displays ligand-dependent allosteric conformational transi- tion(s) [1,2]. Heme regulates drug binding to Sudlow’s site I by heterotropic interactions. Indeed, the affinity of Fe(III)heme for HSA decreases by about one order of magnitude upon drug binding, and accordingly Fe(III)heme binding to HSA decreases drug affinity to the same extent. Therefore, drugs that bind to Sud- low’s site I (e.g. warfarin) act as allosteric effectors for Fe(III)heme association, and vice versa [9,18,25–29]. Also, the heme cleft and the secondary ibuprofen site are allosterically coupled [18,23]. Furthermore, drugs allosterically modulate heme–HSA reactivity [20,30]. HSA also undergoes pH-induced conformational transitions. Between pH 2.7 and pH 4.3, HSA shows a fast-migrating (F) form, characterized by a dramatic increase in viscosity, low solubility, and a significant loss of the a-helical content. Between pH 4.3 and pH 8.0, and in the absence of allosteric effectors, HSA displays the neutral (N) form, which is characterized by a ‘heart-shaped’ structure. At pH values > 8, and in the absence of ligands, HSA changes conformation to the basic (B) form, which displays increased affinity for some ligands [1–3,9,14–16,19,31–33]. Few years ago, five recombinant HSA fragments were prepared and characterized, in order to identify the protein region containing the warfarin primary binding site [7,34]. Here, we report a thorough bio- chemical characterization, including Fe(III)heme-bind- ing properties, of a truncated form of HSA (tHSA) encompassing residues Asp1–Glu382, which corre- spond to domains I and II. On the basis of the three- dimensional structure of full-length HSA, tHSA contains the primary binding sites for heme and warfa- rin, and the secondary ibuprofen-binding site (Fig. 1). Results and Discussion Dynamics and hydration of tHSA Figure 2 shows the nuclear magnetic relaxation disper- sion (NMRD) profiles of 1.0 · 10 )3 m HSA and tHSA solutions at pH 7.0 and 25 °C. The data shown here have been analyzed using Eqn (1), and are consistent with a molecular correlation time s c of 20 ± 1 ns for tHSA, which appears reasonable in comparison to s c = 48 ± 2 ns obtained for full-length HSA under the same experimental conditions (Table 1). Indeed, the molecular correlation time is dependent on the molecular mass of the molecule. A systematic analysis Fig. 1. Heme (Protein Data Bank entry: 1O9X [22]), warfarin (Pro- tein Data Bank entry: 2BXD [12]), and ibuprofen (Protein Data Bank entry: 2BXG [12]) modes of binding to HSA. Domains I and II are rendered as blue and orange ribbons, respectively. Domain III, which has been removed in tHSA, is rendered as pale red ribbons. Heme, warfarin and ibuprofen are rendered in black as ball and stick. Allosteric properties of truncated albumin G. Fanali et al. 2242 FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS of a number of proteins with different sizes indicates that such a value could be expected for a 44 kDa pro- tein [35]; therefore, solution dynamics indicate that tHSA is not aggregated or misfolded. The analysis of the amplitude of the NMRD profile [i.e. b in Eqn (1)] can provide quantitative informa- tion on the number of water molecules contributing to the overall NMRD effect [see Eqns (1,2) and Table 1]. tHSA shows a b-value of (1.3 ± 0.1) · 10 7 s )2 ,as compared to the value of (2.2 ± 0.1) · 10 7 s )2 observed for full-length HSA. By assuming that the b-values obtained by the model-free analysis according to Eqn (1) of the data shown in Fig. 2 are due to bur- ied water molecules and exchangeable protons, and by taking into account that the generalized order para- meter S I is reported to fall in the range 0.5–1 [36], we should expect that about 51 water molecules are local- ized within the tertiary structure of tHSA, as com- pared to 88 water molecules in full-length HSA. Moreover, all of the water molecules appear to be able to exchange with bulk water in a time longer than the reorientational correlation time of the protein and shorter than their own relaxation time [36,37]. There- fore, removal of domain III dramatically affects pro- tein hydration, with a reduction of internal water molecules by a factor of two, independently of the value of the S I parameter (in the range 0.5–1). Binding of Fe(III)heme to tHSA tHSA contains the complete primary heme-binding site, and shows optical and magnetic spectroscopic properties comparable to those of the full-length pro- tein. Heme binds to tHSA, at pH 7.0 and 25 °C (Fig. S1), with K d = 7.4 · 10 )8 m (i.e. K 1 in Scheme 1), indicating that the Fe(III)heme affinity for tHSA is slightly higher than that reported for HSA (K d = 5.0 · 10 )7 m, i.e. K 5 in Scheme 2 [18]). Heme is known to drive the allosteric transition towards the B-state, thus perturbing molecular contacts between the HSA subdomains that stabilize the N-state [8,38]. The affinity constant observed here indicates, there- fore, that the geometry of the Fe(III)heme-binding site is preserved. Moreover, the small, although significant, increase in Fe(III)heme affinity for tHSA could result from the removal of molecular contacts between domains I and III that could hinder the N to B transi- tion in full-length HSA. Figure 3 shows the electronic absorption spectra of Fe(III)heme–tHSA and of full-length Fe(III)heme– HSA. For both Fe(III)heme–proteins, the Soret band Fig. 2. NMRD profiles of full-length HSA (filled squares) and tHSA (open circles), at pH 7.0 and 25 °C. The protein concentration was 1.0 · 10 )3 M. The continuous lines were obtained by analysis of the data according to Eqn (1). For details, see text. Table 1. Parameters obtained from the fitting procedure of NMRD data in Fig. 2 using Eqns (1,2). tHSA HSA D (s )1 ) 0.15 0.16 b (s )2 ) 1.3 · 10 7 2.2 · 10 7 v 0.77 0.76 s c (s) 2.0 · 10 )8 4.8 · 10 )8 N I 51 88 tHSA + heme Heme–tHSA K 1 + L + L K 2 K 4 tHSA–L + heme Heme–tHSA–L K 3 Scheme 1. Equilibria for heme and drug binding to tHSA, according to linked functions [48]. HSA + heme Heme–HSA K 5 + L + L K 6 K 8 HSA–L + heme Heme–HSA–L K 7 Scheme 2. Equilibria for heme and drug binding to HSA, according to linked functions [48]. G. Fanali et al. Allosteric properties of truncated albumin FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 2243 is characterized by a maximum at 400 nm, which is consistent with the high-spin state of the Fe(III) atom. The intensity of the Soret absorption is only slightly affected on going from pH 7 to pH 11. On the other hand, a shoulder at 360 nm appears in Fe(III)heme– tHSA at pH > 9; this spectral change is not observed in Fe(III)heme–HSA. This finding might be accounted for by significant differences in the B-state of tHSA with respect to full-length HSA, potentially arising from the loss of contacts between domains I and III. Relaxometric properties of Fe(III)heme–tHSA Fe(III)heme–HSA has been widely investigated by 1 H- NMR relaxometry [14,18,19,37]. The high value of the paramagnetic contribution to the paramagnetic rela- xivity (R 1p ) of Fe(III)heme–HSA (12.5 mm )1 Æs )1 at 0.01 MHz, and 4.0 mm )1 Æs )1 at 10 MHz, respectively, pH 7.0 and 25 °C) has been formerly ascribed to the occurrence of slowly exchanging water molecules in the surroundings of the paramagnetic Fe(III)heme cen- ter [14,18]. Indeed, the high number of internal water molecules calculated above supports this statement. The paramagnetic contribution to the solvent water proton relaxation rate observed for Fe(III)heme–HSA is quite large as compared to oxygen-carrier heme–pro- teins in the ferric form [39–43]. Figure 4 shows the NMRD profiles of heme–HSA and heme–tHSA. The paramagnetic contribution is dependent on the Larmor frequency, as expected for an S =5⁄ 2 high-spin sys- tem [44]. Owing to the zero field splitting (ZFS) of the S =5⁄ 2 manifold, NMRD data cannot be analyzed in terms of the classic Solomon–Bloembergen–Morgan approach [45]. In slowly rotating systems, where the electronic relaxation time is shorter than the reorienta- tional correlation time, the ZFS Hamiltonian interacts with the Zeeman Hamiltonian in a time-dependent way, and the electronic relaxation cannot be described simply in terms of electron dipole–dipole interaction. Although a rigorous approach would take into account the orientation and the magnitude of the ZFS tensor by numerical methods [46], a set of simplified equations have been proposed to analytically describe the electronic relaxation in S >1⁄ 2 systems (see Experimental procedures) [47]. By fitting NMRD profiles using Eqns (3–11), a set of parameters governing the electronic relaxation was obtained (Table 2). It is noteworthy that the exchange lifetime (s M ) of the localized water molecules close to the Fe(III)heme does not change significantly. The A B Fig. 3. Visible region of the electronic absorption spectra of Fe(III)- heme–tHSA (A) and Fe(III)heme–HSA (B), at 25.0 ° C. The protein concentration was 1.0 · 10 )6 M in 1.0 · 10 )1 M phosphate buffer. The pH values were changed from 7.0 to 11.0 by using 1.0 M NaOH (pH 7.0, continuous line; pH 8.0, dotted line; pH 9.0, dash– dot line; pH 10.0, dash–dot–dot line; pH 11.0, short dash–dot line). For details, see text. Fig. 4. NMRD profile of 1.0 · 10 )3 M Fe(III)heme–HSA (filled squares) and of 1.0 · 10 )3 M Fe(III)heme–tHSA (open circles), at pH 7.0 and 25 °C. The continuous lines were obtained by the analy- sis of data according to Eqns (3–11). For details, see text and Experimental procedures. Allosteric properties of truncated albumin G. Fanali et al. 2244 FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS orientation and magnitude of the ZFS tensor, as well as the correlation time for the static ZFS modulation (s v ), are slightly affected in tHSA with respect to full- length HSA, reflecting possible rearrangements of the heme without relevant structural changes; it should be noted that the reduction of the s v parameter from 3.0 · 10 )11 s in the full-length HSA to 1.5 · 10 )11 sin the truncated protein reflects the reduction of the molecular mass and thus the time constant of the static ZFS modulation. On the other hand, the population of localized water molecules close to Fe(III)heme is reduced to 53%. If it is assumed that, on average, four water molecules reside at an average distance of 3.3 A ˚ from iron ion in Fe(III)heme–HSA, this number is reduced to 2.1 in Fe(III)heme–tHSA. Interestingly, the fraction of water molecules close to Fe(III)heme reflects the overall reduction of the number of water molecules within tHSA (58%) as calculated from the data in Fig. 2. Moreover, the almost coincident corre- spondence between all the other parameters indicates that the Fe(III)heme geometry is not significantly affected by removal of domain III. Drug binding to tHSA and to Fe(III)heme–tHSA To ascertain whether drug binding affects heme affin- ity, Fe(III)heme binding to tHSA was investigated in the presence of ibuprofen and warfarin. Analysis of binding isotherms (Fig. S2) according to Eqn (12) allowed us to obtain K d = 3.4 · 10 )6 m for Fe(III)- heme binding to tHSA in the presence of 1.0 · 10 )4 m ibuprofen, and K d = 3.0 · 10 )6 m (i.e. K 3 in Scheme 1) for Fe(III)heme binding to tHSA in the presence of 1.0 · 10 )5 m warfarin (Table 2). The anal- ysis of hyperbolic binding curves (Fig. S3) according to Eqn (12) allowed us to obtain K d = 1.3 · 10 )5 m for ibuprofen binding to Fe(III)heme–tHSA, and K d = 5.0 · 10 )6 m for warfarin binding to Fe(III)- heme–tHSA (i.e. K 4 in Scheme 1). According to linked functions [48], K 2 Æ K 3 = K 1 Æ K 4 . Therefore, from the data reported above, it is possible to obtain the value of the dissociation equilibrium constants for tHSA– ibuprofen (K d = 2.8 · 10 )7 m) and tHSA–warfarin (K d = 1.2 · 10 )7 m) complex formation, respectively (i.e. K 2 in Scheme 1; see Table 4). For comparison, Fe(III)heme binding to full-length HSA in the presence of drugs was investigated. Values of K d obtained by data analysis according to Eqn (12) are reported in Table 3. In the presence of ibuprofen (Fig. S4), the K d value for Fe(III)heme–HSA complex formation (K d = 3.9 · 10 )6 m, i.e. K 7 in Scheme 2) is similar to the K d value for Fe(III)heme–tHSA complex formation (K d = 3.4 · 10 )6 m), under the same experi- mental conditions. Also in the presence of warfarin, the affinity of Fe(III)heme for HSA (K d = 1.2 · 10 )6 m, i.e. K 7 in Scheme 2) is similar to that reported for Fe(III)heme–tHSA complex formation (K d = 3.0 · 10 )6 m). Finally, the effect of Fe(III)heme on drug affinity for full-length HSA was taken into account (Fig. S5). Ibuprofen binds to Fe(III)heme–HSA with K d = 5.4 · 10 )6 m (i.e. K 8 in Scheme 2). Interestingly, this value is smaller than that obtained for ibuprofen binding to Fe(III)heme–tHSA (K d = 1.3 · 10 )5 m) under the same experimental conditions, indicating a higher affinity of ibuprofen for full-length HSA. As the binding isotherms were obtained by measuring changes in the Soret band of Fe(III)heme, binding of ibuprofen to a site that does not alter the heme envi- ronment would be spectroscopically silent. Conversely, the K d value for warfarin binding to full-length Fe(III)heme–HSA (K d = 3.1 · 10 )6 m, i.e. K 8 in Scheme 2) is not significantly different from that obtained for warfarin binding to Fe(III)heme–tHSA (K d = 5.0 · 10 )6 m) (Table 4). According to linked Table 2. Parameters obtained from the fitting procedure of NMRD data in Fig. 4 using Eqns (3–11). tHSA HSA q (a.u.) 2.1 4.0 r (A ˚ ) 3.3 3.3 s M (s) 8.0 · 10 )6 6.6 · 10 )6 s v (s) 1.5 · 10 )11 3.0 · 10 )11 h (°)36 45 D (cm )1 )49 41 D (radÆs )2 ) 1.6 · 10 18 1.6 · 10 18 Table 4. Values of the equilibrium dissociation constants (K d , M) for drug binding to tHSA and HSA in the absence and in the presence of Fe(III)heme, at pH 7.0 and 25 °C. Drug tHSA Fe(III)heme– tHSA HSA Fe(III)heme– HSA Warfarin 1.2 · 10 )7a 5.0 · 10 )6 1.3 · 10 )6a 3.1 · 10 )6 Ibuprofen 2.8 · 10 )7a 1.3 · 10 )5 3.9 · 10 )6a 5.4 · 10 )6 a Calculated according to linked functions (Schemes 1,2). Table 3. Values of the equilibrium dissociation constants (K d , M) for Fe(III)heme binding to tHSA and HSA in the absence and presence of ibuprofen and warfarin, at pH 7.0 and 25 °C. No drug Warfarin Ibuprofen tHSA 7.4 · 10 )8 3.0 · 10 )6 3.4 · 10 )6 HSA 5.0 · 10 )7a 1.2 · 10 )6 3.9 · 10 )6 a From [18]. G. Fanali et al. Allosteric properties of truncated albumin FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 2245 functions [48], K 6 Æ K 7 = K 5 Æ K 8 . Therefore, from the data reported above, it is possible to obtain the value of the dissociation equilibrium constant for full-length HSA–ibuprofen (K d = 3.9 · 10 )6 m) and for full- length HSA–warfarin (K d = 1.3 · 10 )6 m, i.e. K 6 in Scheme 2) complex formation, respectively (see Scheme 2 and Table 4). Conclusion The data reported here indicate that tHSA is a valuable model with which to investigate the allosteric properties of HSA. Indeed, by removal of the C-terminal domai- n III, a number of contacts that involve domain I (con- taining the heme site) and domain II (containing the warfarin site) are lost; nevertheless, the allosteric linkage between the heme and warfarin (i.e. Sudlow’s site I) sites is maintained. Moreover, tHSA allows independent analysis of the linkages between different drug-binding sites. In the case of ibuprofen, for instance, modulation of Fe(III)heme affinity cannot be attributed to ibupro- fen binding to either its primary (in domain III) or secondary (in domain II) binding site in full-length HSA. Indeed, after removal of domain III, ibuprofen binds to a single site, thus allowing investigation of the effect of the occupancy of the secondary ibuprofen- binding site on Fe(III)heme affinity. Finally, it is worth noting that the three ligands considered here (i.e. ibuprofen, warfarin, and heme) display an increased affinity for tHSA with respect to HSA. If tHSA could fold in a different conformation, or could not achieve a stable fold, it would be reason- able to envisage that one or more of the considered ligands would display reduced or no affinity. This defi- nitely supports the idea that tHSA is a fragment of the HSA structure with similar folding and similar confor- mational transitions. The analysis of NMRD profiles of tHSA and Fe(III)heme–tHSA, as well as the analysis of the optical spectra of Fe(III)heme–tHSA, are in agreement with this premise. The allosteric properties that make HSA a peculiar monomeric protein and account for the regulation of ligand-binding modes by heterotropic interactions are maintained after the removal of domain III. Indeed, warfarin allosterically inhibits Fe(III)heme binding, and, in turn, Fe(III)heme allosterically inhibits warfa- rin binding. Moreover, a similar allosteric mechanism modulates ibuprofen and Fe(III)heme binding to tHSA that would not occur in the full-length protein. Actu- ally, binding of ibuprofen to the (secondary) tHSA binding site inhibits Fe(III)heme binding, and, in turn, Fe(III)heme inhibits ibuprofen binding. This finding explains a former observation that was attributed to ibuprofen binding to the warfarin site of HSA when the structural description of the ibuprofen-binding mode(s) was not available [9]. In conclusion, a detailed analysis of allosteric mech- anisms that regulate ligand binding to HSA has been made possible by using a simple model protein (tHSA) that maintains the allosteric properties of full-length HSA with a reduced number of binding sites. A deep understanding of the functional links between different sites of HSA is essential to avoid critical and unex- pected changes in the pharmacokinetic properties of therapeutic drugs. Experimental procedures tHSA cloning, expression, and purification The cDNA sequence of tHSA (corresponding to residues Asp1–Glu382 of HSA) was amplified by PCR from a human liver cDNA library, and cloned into pPICZa-A (In- vitrogen, Carlsbad, CA, USA), downstream of the Saccha- romyces cerevisiae secretion factor, under the control of the AOX1 promoter. Primer synthesis and construct sequencing services were provided by MWG Biotech (Ebersberg, Germany). The construct was amplified in Escherichia coli, and subsequently transformed into Pichia pastoris strain GS115. Cells grown in glycerol medium were harvested and resuspended in methanol containing the medium to induce protein synthesis. Protein expression in the medium was checked by SDS ⁄ PAGE. The medium containing the expressed protein was ultrafiltered using a 10 kDa cut-off membrane (Centricon Plus70; Millipore Corporation, Biller- ica, MA, USA), and the concentrated protein was lyophi- lized. To remove hydrophobic ligands, the protein was dissolved in water, acidified to pH 3.5 with acetic acid, and treated for 2 h with activated charcoal at room temperature [49]. After charcoal removal by centrifugation (20 000 g for 20 min at 2°C), the pH was brought to 7.0 with aqueous ammonia. The protein concentration was measured accord- ing to Bradford [50], and the solution was then partitioned into aliquots and freeze-dried. The integrity of the protein was checked by digestion with trypsin and subsequent MALDI-TOF MS analysis (Reflex III; Bruker Daltonics, Bremen, Germany). All other reagents (Sigma-Aldrich, St Louis, MO, USA) were of the highest purity available, and were used without further purification. HSA (Sigma- Aldrich, St Louis, MO, USA) was essentially fatty acid- free, according to the charcoal delipidation protocol [49,51,52], and was used without further purification. Protein and ligand solutions The Fe(III)heme–tHSA and Fe(III)heme–HSA solutions were prepared by adding the appropriate volume of the Allosteric properties of truncated albumin G. Fanali et al. 2246 FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 1.2 · 10 )2 m Fe(III)heme solution, dissolved in 1.0 · 10 )1 m NaOH, to a 1.0 · 10 )3 m protein solution in 0.1 m phosphate buffer (pH 7.0), to a final Fe(III)heme– protein concentration of 1.0 · 10 )3 m. The concentration of the Fe(III)heme stock solution was checked as bis-imidazo- late complex in SDS micelles with an extinction coefficient of 14.5 mm )1 cm )1 (at 535 nm) [53]. The ibuprofen solution was prepared by dissolving the drug in 1.0 · 10 )1 m phos- phate buffer, at pH 7.0 and 25.0 °C. The warfarin solution was prepared by stirring the drug in 1.0 · 10 )1 m phos- phate buffer at pH 12.0 until it dissolved, and then adjust- ing the pH to 7.0 with HCl (at 25.0 °C). NMRD NMRD profiles, i.e. plots of solvent water proton relaxa- tion rates as a function of the applied magnetic field, were measured on a Stelar Spinmaster FFC field cycling spec- trometer (Stelar, Mede, PV, Italy), operating in a field range from 2.4 · 10 )4 T to 2.35 · 10 )1 T (corresponding to proton Larmor frequencies from 0.01 MHz to 10 MHz). The temperature was set at 25 °C by using a built-in tem- perature controller, and directly measured in the probehead with a mercury thermometer. The relaxometer is able to switch the magnetic field strength in a millisecond time- scale, and works under complete computer control. As a blank, the measurement of T 1 of the buffer solution (1.0 · 10 )1 m phosphate buffer, pH 7.0) was performed in the same range of temperatures. An absolute uncertainty in 1 ⁄ T 1 of about 1%, on average, has been assessed. NMRD profiles of 1.0 · 10 )3 m tHSA and HSA were analyzed in terms of a model-free approach [35,36], accord- ing to Eqn (1): R 1 ðxÞ¼R w TðÞþD þ b 1 À vðÞ0:2JðxÞþ0:8Jð2xÞ½ f þ v 0:1Jð0Þþ0:3JðxÞþ0:6Jð2xÞ½gð1Þ where R w (T) = 0.9756 T · 0.6985 is the relaxation rate of the blank (i.e. of the buffer) solution at any given tempera- ture T, D is the part of R 1 (x) that remains in the extreme motional narrowing regime, b is the mean square fluctua- tion of the lattice variable coupled to the observed nuclear spin, and s c is the correlation time for the time-dependent spin-lattice coupling. J(x) is the Lorentzian spectral density function JðxÞ¼ s c 1 þðxs c Þ 2 : By assuming that the NMRD profile is determined by water molecules buried within the protein core in intermedi- ate–fast exchange with bulk water, s c turns out to be the reorientational correlation time, and the amplitude parameter A would be related to the number of internal water molecules (N I ) as described hereafter (Eqn 2). N I S 2 I ¼ b  N T x 2 D ð2Þ N T is the number of total water molecules (per protein), and x D is the intramolecular dipole frequency. In the case of hydrogen nuclei, x D = 2.36 · 10 5 radÆs )1 . S I is the mean-square generalized order parameter for the internal water molecules, and cannot be > 1 [39]. NMRD profiles of 1.0 · 10 )3 m Fe(III)heme–tHSA and Fe(III)heme–HSA were obtained by subtracting from the measured relaxation rate the relaxation rate of the corre- sponding apoprotein (i.e. tHSA and HSA) at the same frequency. Profiles were analyzed in terms of Eqns (3–11) [47]: R 1p ¼ Nq 55:56 T 1m þ s M ðÞ À1 ð3Þ T 1m ¼ R 1z þ R 1x ðÞ À1 ð4Þ R 1z ¼ 35 3 K r 6  U 1 h z ðÞ s Sz 1 þ x 2 I s 2 Sx  ð5Þ R 1x ¼ 2 3 K r 6  U 2 h z ðÞ 10s Sx 1þ16c 2 D 2 s 2 Sx  þ 16s Sx 1þ4c 2 D 2 s 2 Sx þ 9s Sx 1þx 2 I s 2 Sx  ð6Þ K ¼ 15 2 l 0 4p h 2p  2 c 2 s c 2 I SðS þ 1Þð7Þ U 1 h z ðÞ¼ 1 þ P 2 cos h z ðÞ 3 ð8Þ U 2 h z ðÞ¼ 2 À P 2 sin h z ðÞ 6 ð9Þ s À1 Sz ¼ 2 35 ½4SðS þ 1ÞÀ3D 2  40s m 1 þ 4c 2 D 2 s 2 v  þ 80s m 1 þ 16c 2 D 2 s 2 v þ 160s v 1 þ 36c 2 D 2 s 2 v  ð10Þ s À1 Sx ¼ 2 35 ½4SðSþ1ÞÀ3D 2  168s v þ 152s v 1 þ4c 2 D 2 s 2 v  þ 200s v 1 þ16c 2 D 2 s 2 v þ 40s v 1 þ36c 2 D 2 s 2 v  ð11Þ where N is the molar concentration of Fe(III)heme, q is the number of water molecules coordinated to the metal ion, r is the average distance between the metal ion and the protons of the water molecules, s M is their mean residence lifetime, x I is the proton Larmor frequency, P 2 (x) is the second-order Legendre polynomial, s v is the correlation time of the modulation of the transient ZFS, D is the aver- age energy of the electron–ZFS coupling, D is the energy separation of ZFS levels, h is the orientation of the ZFS tensor in the molecular frame with respect to the laboratory frame, c is the speed of light, l 0 is the permeability of vacuum, h is the Planck constant, S is the electron spin quantum number, and c S and c I are the electron and the proton nuclear magnetogyric ratios, respectively. G. Fanali et al. Allosteric properties of truncated albumin FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 2247 Optical binding studies Fe(III)heme binding to HSA and tHSA, in the absence and presence of 1.0 · 10 )4 m ibuprofen and 1.0 · 10 )5 m warfarin, was investigated spectrophotometrically using an optical cell with 1.0 cm path length on a Cary 50 Bio spectrophotometer (Varian Inc., Palo Alto, CA, USA). In experiments carried out at different Fe(III)heme concen- trations, a small amount of the 1.0 · 10 )3 m HSA or tHSA solution was diluted in the optical cell in 1.0 · 10 )1 m phosphate buffer and 10% dimethylsulfoxide (pH 7.0), to a final protein concentration of 1.0 · 10 )6 m. Then, small amounts of Fe(III)heme (1.2 · 10 )2 m) were added to the protein solution, and the absorbance spectra were recorded after incubation for few minutes, after each addition. In experiments carried out at different drug concentrations, a small amount of Fe(III)heme (1.2 · 10 )2 m) and of HSA solution (about 1.0 · 10 )3 m) was diluted in the optical cell in 1.0 · 10 )1 m phosphate buffer and 10% dimethylsulfoxide (pH 7.0), to a final Fe(III)heme–HSA or Fe(III)heme–tHSA concentration of 1.0 · 10 )6 m. Then, small aliquots of 1.0 · 10 )3 m ibuprofen or 2.0 · 10 )2 m warfarin were added to the Fe(III)heme–protein solution, and the absorbance spectra were recorded after incubation for a few minutes after each addition. Binding isotherms were analyzed by plotting the absorbance change as a function of the ligand concentration. Data were analyzed according to Eqn (12): where DA is the difference in the Soret band (400 nm) absorbance, DA max is the absorbance difference at saturating ligand concentration, K d is the dissociation equilibrium constant for ligand–protein complex formation, [L t ] is the total concentration of the variable ligand [Fe(III)heme, warfarin, or ibuprofen], [P t ] is the total concentration of the protein [(t)HSA, Fe(III)heme– (t)HSA, warfarin–(t)HSA, or ibuprofen–(t)HSA], and N is the number of equivalent binding sites (N = 1 for both tHSA and HSA for each of the three ligands considered). Acknowledgements We gratefully acknowledge S. Aime and S. Baroni for helpful discussions. References 1 Fasano M, Curry S, Terreno E, Galliano M, Fanali G, Narciso P, Notari S & Ascenzi P (2005) The extraordi- nary ligand binding properties of human serum albu- min. IUBMB Life 57, 787–796. 2 Ascenzi P, Bocedi A, Notari S, Fanali G, Fesce R & Fasano M (2006) Allosteric modulation of drug binding to human serum albumin. Mini Rev Med Chem 6, 483–489. 3 Peters T Jr (ed.) (1996) All about Albumin: Biochemistry, Genetics and Medical Applications. Academic Press, San Diego; London. 4 Curry S, Mandelkov H, Brick P & Franks N (1998) Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites. Nat Struct Biol 5, 827–835. 5 Curry S (2002) Beyond expansion: structural studies on the transport roles of human serum albumin. Vox Sang 83, 315–319. 6 Sudlow G, Birkett DJ & Wade DN (1975) The charac- terization of two specific drug binding sites on human serum albumin. Mol Pharmacol 11, 824–832. 7 Dockal M, Chang M, Carter DC & Ru ¨ ker F (2000) Five recombinant fragments of human serum albumin. Tools for the characterization of the warfarin binding site. Protein Sci 9, 1455–1465. 8 Petitpas I, Bhattacharya AA, Twine S, East M & Curry S (2001) Crystal structure analysis of warfarin binding to human serum albumin: anatomy of drug site I. J Biol Chem 276, 22804–22809. 9 Baroni S, Mattu M, Vannini A, Cipollone R, Aime S, Ascenzi P & Fasano M (2001) Effect of ibuprofen and warfarin on the allosteric properties of haem–human serum albumin. A spectroscopic study. Eur J Biochem 268, 6214–6220. 10 Hage DS, Noctor TA & Wainer IW (1995) Character- ization of the protein binding of chiral drugs by high- performance affinity chromatography. Interactions of R- and S-ibuprofen with human serum albumin. J Chromatogr A 693, 23–32. 11 Chen J, Fitos I & Hage DS (2006) Chromatographic analysis of allosteric effects between ibuprofen and ben- zodiazepines on human serum albumin. Chirality 18, 24–36. DA ¼ DA max Á K À1 d Á L t ½þN Á P t ½ÁK À1 d þ 1 ÀÁ À ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi K À1 d Á L t ½þN Á P t ½ÁK À1 d þ 1 ÀÁ 2 À4K À2 d Á L t ½ÁN Á P t ½ q ! 2K À1 d Á L t ½ ð12Þ Allosteric properties of truncated albumin G. Fanali et al. 2248 FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 12 Ghuman J, Zunszain PA, Petitpas I, Bhattacharya AA, Otagiri M & Curry S (2005) Structural basis of the drug-binding specificity of human serum albumin. J Mol Biol 353, 38–52. 13 Sugio S, Kashima A, Mochizuki S, Noda M & Kobay- ashi K (1999) Crystal structure of human serum albu- min at 2.5 A ˚ resolution. Protein Eng 12, 439–446. 14 Fasano M, Baroni S, Vannini A, Ascenzi P & Aime S (2001) Relaxometric characterization of human hemal- bumin. J Biol Inorg Chem 6, 650–658. 15 Mattu M, Vannini A, Coletta M, Fasano M & Ascenzi P (2001) Effect of bezafibrate and clofibrate on the heme-iron geometry of ferrous nitrosylated heme– human serum albumin: an EPR study. J Inorg Biochem 84, 293–296. 16 Fasano M, Mattu M, Coletta M & Ascenzi P (2002) The heme-iron geometry of ferrous nitrosylated heme– serum lipoproteins, hemopexin, and albumin: a compar- ative EPR study. J Inorg Biochem 91, 487–490. 17 Monzani E, Curto M, Galliano M, Minchiotti L, Aime S, Baroni S, Fasano M, Amoresano A, Salzano AM, Pucci P et al. (2002) Binding and relaxometric proper- ties of heme complexes with cyanogen bromide fragments of human serum albumin. Biophys J 83, 2248–2258. 18 Fanali G, Bocedi A, Ascenzi P & Fasano M (2007) Modulation of heme and myristate binding to human serum albumin by anti-HIV drugs. An optical and NMR spectroscopic study. FEBS J 274, 4491–4502. 19 Fanali G, Ascenzi P & Fasano M (2007) Effect of prototypic drugs ibuprofen and warfarin on global chaotropic unfolding of human serum heme–albumin: a fast-field-cycling 1 H-NMR relaxometric study. Biophys Chem 129, 29–35. 20 Nicoletti FP, Howes BD, Fittipaldi M, Fanali G, Fasano M, Ascenzi P & Smulevich G (2008) Ibuprofen induces an allosteric conformational transition in the heme com- plex of human serum albumin with significant effects on heme ligation. J Am Chem Soc 130, 11677–11688. 21 Wardell M, Wang Z, Ho JX, Robert J, Ru ¨ ker F, Ruble J & Carter DC (2002) The atomic structure of human methemalbumin at 1.9 A ˚ . Biochem Biophys Res Com- mun 291, 813–819. 22 Zunszain PA, Ghuman J, Komatsu T, Tsuchida E & Curry S (2003) Crystal structural analysis of human serum albumin complexed with hemin and fatty acid. BMC Struct Biol 3, 6, doi:10.1186/1472-6807-3-6. 23 Simard JR, Zunszain PA, Hamilton JA & Curry S (2006) Location of high and low affinity fatty acid binding sites on human serum albumin revealed by NMR drug-competition analysis. J Mol Biol 361, 336–351. 24 Fasano M, Fanali G, Leboffe L & Ascenzi P (2007) Heme binding to albuminoid proteins is the result of recent evolution. IUBMB Life 59, 436–440. 25 Chuang VTG & Otagiri M (2002) How do fatty acids cause allosteric binding of drugs to human serum albu- min? Pharm Res 19, 1458–1464. 26 Fitos I, Visy J & Kardos J (2002) Stereoselective kinet- ics of warfarin binding to human serum albumin: effect of an allosteric interaction. Chirality 14, 442–448. 27 Chen J, Ohnmacht C & Hage DS (2004) Studies of phenytoin binding to human serum albumin by high- performance affinity chromatography. J Chromatogr B Analyt Technol Biomed Life Sci 809, 137–145. 28 Ascenzi P, Bocedi A, Bolli A, Fasano M, Notari S & Polticelli F (2005) Allosteric modulation of monomeric proteins. Biochem Mol Biol Educ 33, 169–176. 29 Kim HS & Hage DS (2005) Chromatographic analysis of carbamazepine binding to human serum albumin. J Chromatogr B Analyt Technol Biomed Life Sci 816, 57–66. 30 Ascenzi P & Fasano M (2007) Abacavir modulates per- oxynitrite-mediated oxidation of ferrous nitrosylated human serum heme–albumin. Biochem Biophys Res Commun 353, 469–474. 31 Wilting J, van der Giesen WF, Janssen LH, Weideman MM, Otagiri M & Perrin JH (1980) The effect of albu- min conformation on the binding of warfarin to human serum albumin. The dependence of the binding of war- farin to human serum albumin on the hydrogen, calcium, and chloride ion concentrations as studied by circular dichroism, fluorescence, and equilibrium dialy- sis. J Biol Chem 255, 3032–3037. 32 Yamasaki K, Maruyama T, Yoshimoto K, Tsutsumi Y, Narazaki R, Fukuhara A, Kragh-Hansen U & Otagiri M (1999) Interactive binding to the two principal ligand binding sites of human serum albumin: effect of the neutral-to-base transition. Biochim Biophys Acta 1432, 313–323. 33 Sakai H, Masada Y, Horinouchi H, Yamamoto M, Ikeda E, Takeoka S, Kobayashi K & Tsuchida E (2004) Hemoglobin-vesicles suspended in recombinant human serum albumin for resuscitation from hemorrhagic shock in anesthetized rats. Crit Care Med 32, 539–545. 34 Dockal M, Carter DC & Ru ¨ ker F (1999) The three recombinant domains of human serum albumin. Struc- tural characterization and ligand binding properties. J Biol Chem 274, 29303–29310. 35 Bertini I, Fragai M, Luchinat C & Parigi G (2000) 1 H NMRD profiles of diamagnetic proteins: a model- free analysis. Magn Res Chem 38, 543–550. 36 Halle B, Denisov VP & Venu K (1999) Multinuclear relaxation dispersion studies of protein hydration. In Biological Magnetic Resonance: Structure Computation and Dynamics in Protein NMR (Krishna NR & Berliner LJ, eds), 17 , 419–484. Kluwer Academic ⁄ Plenum Publishers, New York. 37 Fasano M, Orsale M, Melino S, Nicolai E, Forlani F, Rosato N, Cicero D, Pagani S & Paci M (2003) Surface G. Fanali et al. Allosteric properties of truncated albumin FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS 2249 changes and role of buried water molecules during the sulfane sulfur transfer in Rhodanese from Azotobacter vinelandii: a fluorescence quenching, 15 N NMR relaxa- tion, and nuclear magnetic relaxation dispersion spectroscopic study. Biochemistry 42, 8550–8557. 38 Fanali G, Fesce R, Agrati C, Ascenzi P & Fasano M (2005) Allosteric modulation of myristate and Mn(III)- heme binding to human serum albumin optical and NMR spectroscopy characterization. FEBS J 272, 4672–4683. 39 Fabry ME & Eisenstadt M (1974) The mechanism of water proton nuclear magnetic resonance relaxation in the presence of mammalian and Aplysia metmyoglobin fluoride. J Biol Chem 249, 2915–2919. 40 Giacometti GM, Ascenzi P, Brunori M, Rigatti G, Gia- cometti G & Bolognesi M (1981) Absence of water at the sixth co-ordination site in ferric Aplysia myoglobin. J Mol Biol 151, 315–319. 41 Modi S, Behere DV, Mitra S & Bendall DS (1991) Coordination geometry of haem in cyanogen bromide modified myoglobin and its effect on the formation of compound I. J Chem Soc Chem Commun 1991, 830– 831, doi:10.1039/C39910000830. 42 Aime S, Ascenzi P, Fasano M & Paoletti S (1993) NMR relaxometric studies of water accessibility to haem cavity in horse heart and sperm whale myoglobin. Magn Reson Chem 31, S85–S89. 43 Aime S, Fasano M, Paoletti S, Cutruzzola ` F, Desideri A, Bolognesi M, Rizzi M & Ascenzi P (1996) Structural determinants of fluoride and formate binding to hemo- globin and myoglobin: crystallographic and 1H-NMR relaxometric study. Biophys J 70, 482–488. 44 Banci L, Bertini I & Luchinat C (1991) Electron and Nuclear Relaxation. VCH, Weinheim. 45 Schaefle N & Sharp R (2004) Electron spin relaxation due to reorientation of a permanent zero field splitting tensor. J Chem Phys 121, 5387–5394. 46 Belorizky E, Fries PH, Helm L, Kowalewski J, Kruk D, Sharp RR & Westlund PO (2008) Comparison of different methods for calculating the paramagnetic relaxation enhancement of nuclear spins as a function of the magnetic field. J Chem Phys 128, 052315, doi: 10.1063/1.2833957. 47 Sharp RR (2002) Closed-form expressions for level-averaged electron spin relaxation times outside the Zeeman Limit: application to paramagnetic NMR relaxation. J Magn Res 154 , 269–279. 48 Wyman J (1964) Linked functions and reciprocal effects in hemoglobin: a second look. Adv Protein Chem 19, 223–286. 49 Cabrera-Crespo J, Goncalves VM, Martins EA, Grellet S, Lopes AP & Raw I (2000) Albumin purification from human placenta. Biotechnol Appl Biochem 31, 101–106. 50 Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248–254. 51 Sogami M & Foster JF (1968) Isomerization reactions of charcoal-defatted bovine plasma albumin. The N–F tran- sition and acid expansion. Biochemistry 7, 2172–2182. 52 Chen RF (1967) Removal of fatty acids from serum albumin by charcoal treatment. J Biol Chem 242, 173– 181. 53 Boffi A, Das TK, Della Longa S, Spagnuolo C & Rous- seau DL (1999) Pentacoordinate hemin derivatives in sodium dodecyl sulfate micelles: model systems for the assignment of the fifth ligand in ferric heme proteins. Biophys J 77, 1143–1149. Supporting information The following supplementary material is available: Fig. S1. Binding isotherm for Fe(III)heme–tHSA com- plex formation, at pH 7.0 and 25 °C. Fig. S2. Fe(III)heme binding to tHSA, at pH 7.0 and 25 °C. Fig. S3. Drug binding to Fe(III)heme–tHSA, at pH 7.0 and 25 °C. Fig. S4. Fe(III)heme binding to HSA in the presence of drugs, at pH 7.0 and 25 °C. Fig. S5. Drug binding to Fe(III)heme–HSA, at pH 7.0 and 25 °C. This supplementary material can be found in the online version of this article. Please note: Wiley-Blackwell is not responsible for the content or functionality of any supplementary materials supplied by the authors. Any queries (other than missing material) should be directed to the corre- sponding author for the article. Allosteric properties of truncated albumin G. Fanali et al. 2250 FEBS Journal 276 (2009) 2241–2250 ª 2009 The Authors Journal compilation ª 2009 FEBS . Allosteric and binding properties of Asp1–Glu382 truncated recombinant human serum albumin – an optical and NMR spectroscopic investigation Gabriella. M (2005) Allosteric modulation of myristate and Mn(III)- heme binding to human serum albumin – optical and NMR spectroscopy characterization. FEBS J 272, 467 2–4 683. 39

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