ACCURATE ALIGNMENT OF SEQUENCING READS FROM VARIOUS GENOMIC ORIGINS

... genome The challenges of alignment of SGS reads are composed of different error profiles of sequenced reads from different sequencing technologies, short read lengths (reads from SGS can be ~36 ... high volume of reads from various wet-lab/drylab origins accurately and efficiently Hence, a salvo of alignment methods was designed to handle these reads 3.1 T...

Ngày tải lên: 09/09/2015, 11:07

... hospital of the Medical Faculty of Van Yuzuncu Yil University (Van, Turkey) Identification methods: Identification of species was made on the basis of the requirement of CO2 for growth, production of ... susceptibility patterns of Brucella spp appear to vary geographically Therefore, we suggest, regional periodic assessment of susceptibility of strains to antimicrobials Th...

Ngày tải lên: 25/10/2012, 11:10

... formation of branches, which constitute the parallel blocks that account for the nonlinearity (a) Short reads Alignments (b) Short reads Alignments (c) Short reads Alignments Figure alignments against ... methods Compared with the "reference only" alignments, the graph alignments increased the number of recovered SNPs by 15%, of deletions by 22.6%, and of insertions by 3...

Ngày tải lên: 09/08/2014, 20:20

... out the less-likely possibility of a systematic error in the sequencing In 18 of the discrepancies, the replicate sample was unable to make a high-quality call The majority of these positions (72%) ... comparison of their coverage distribution, we normalized the coverage by dividing the observed coverage of each base by the mean coverage of all the targeted bas...

Ngày tải lên: 09/08/2014, 20:20

... 17 and 24 hpf (A) Distribution of fabp3 transcripts (A1, A 2) in the diencephalon (Di), hindbrain (Hb), spinal cord (Sc), and somites (So), and fabp4 transcripts (A3, A 4) in the retina (Re) of ... in the specificity and affinity of ligand binding by mammalian FABP4 [23] 1624 The phylogenetic relationship of zebrafish fabp4 and the H6-FABP gen...

Ngày tải lên: 07/03/2014, 10:20

... PCR and sequencing A QuickPrepÒ Micro mRNA Purification Kit (Amersham Bioscience) was used for isolation of mRNA from P hilaris larval midguts First-strand cDNA synthesis from the isolated mRNA and ... degradation activity of P hilaris cellulase against crystalline cellulose, Avicel (Merck) was used under the same conditions as the CMCase assay Optimal pH for P h...

Ngày tải lên: 17/03/2014, 10:20

... (1) with zijk relative growth increment of the plant volume from 1992 to 1993 of the k-th plant of the i-th seedlot in the j-th block; ( 92 v ijk ) volume of the k-th plant of the i-th seedlot in ... For explanation of the plot see legend to figure 2a Growth performance of Gaultheria shallon 603 Table II Summary of the p-values of all the performed ANOVAs Variables S...

Ngày tải lên: 08/08/2014, 14:20

... shown in table IV for each of the surveys The vegetation cover was best controlled in disked plots Disking combined with total weed control reduced the vegetation to 2.9% in cover, 0.1 % in height, ... the seedling grade on vegetation regeneration and growth is minimal within the st year after planting Soil cultivation treatments included pitting, augering, ripping (subso...

Ngày tải lên: 08/08/2014, 19:21

... Page 12 of 12 doi:10.1186/gb-2010-11-10-r99 Cite this article as: Homer and Nelson: Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA ... Local re-alignment of simulated data Local re-alignment of empirical data To assess the performance of local re-alignment on a dataset with a known di...

Ngày tải lên: 09/08/2014, 22:23

... same microsatellite profile This group included all accessions from the main rose oil production sites of Damask rose in Iran The pattern of this group was identical to that of an accession from ... that the origin and centre of diversity of Damask roses can be found in this region In Iran, cultivation and consumption of Damask roses has a long history C...

Ngày tải lên: 12/08/2014, 05:20

... networks from diverse genomic data lies in the heterogeneity and high noise levels in large-scale data sets High-throughput data by nature are often noisy and simple combinations of results from ... network discovery Previous work in identifying groups of genes involved in specific biological pathways from interaction networks has focused on mainly binary http://genomebiol...

Ngày tải lên: 14/08/2014, 16:20

... due to sequencing errors For NGS sequencers like Illumina and SOLiD, the majority of sequencing errors are of this type The first contribution of this thesis is the introduction of a fast and memory-efficient ... overview of the importance and applications of genomic sequencing We will now present a review of the technologies behind genome sequencing 2.4.1 Sanger S...

Ngày tải lên: 10/09/2015, 09:11

... implementation of food safety policies This thesis will cover two broad areas of contaminants from food contact materials: Determination of the migration of bisphenolic monomers from canned coatings into food, ... migration of various types of toxic contaminants from food packaging materials into oily, aqueous and acidic food matrices The first part of...

Ngày tải lên: 14/09/2015, 08:39

... Namasivayam, and C and Technol., by by solutions K of waste congo slurry red J 53 : 153 - 157 (1992) N Removal waste : 32 - 42 N Removal celluosic Removal biogas by Technol Muniasamy, (1996) T ... Prot R wastewater and by hydroxide Yamuna, R adsorption Waste T on Dye waste Management, : 14 (1994) S., Prasad, G and chrome dye from aqueous : ash fly by : Indian...

Ngày tải lên: 23/09/2012, 14:47

... endothelium (20) In the present paper we report, that viable elementary bodies of C pneumoniae with typical electron microscopic structure can be isolated from the serum samples of the patients with ... patients with acute coronary syndrome Furthermore, using combination of bacteriological and PCR-based methods we show herein that patients with acute c...

Ngày tải lên: 26/10/2012, 08:57