conductance spectrum and mulliken population analysis are computed which show good agreement with each other. Our major results include fi ve points: First, zero bias conductance is mainl[r]
(1)Original Article
Transport in a fullerene terminated aromatic molecular device
Rupan Preet Kaur*, Derick Engles
Department of Electronics Technology, Guru Nanak Dev University, Amritsar, India
a r t i c l e i n f o Article history:
Received 17 January 2018 Received in revised form 13 February 2018 Accepted 15 February 2018 Available online 23 February 2018
Keywords:
DFT NEGF HOMO LUMO Mulliken Rectification
a b s t r a c t
In this work, we propose fullerene molecule C20as an anchor to fabricate a robust aromatic molecular junction The electron transport properties of this fullerene terminated aromatic molecular device at zero bias andfinite bias voltage are investigated by using non-equilibrium Green's function combined with density functional theory Device density of states, transmission spectrum, molecular projected self-consistent Hamiltonian (MPSH) eigen states, mulliken population, IeV and GeV characteristics conclude the electron transport through inelastic tunneling due to shifting of molecular orbitals (MOs) with bias voltage This transition of MOs leads to variation in the injection gap and HOMOeLUMO gap, which modifies the current and conductance spectrum The studied MPSH states emphasise the role of fullerene anchors in binding anthracene molecule with gold electrodes These simulated results are in good agreement with the experimental results, demonstrating the suitability of C20 fullerenes as anchoring groups
©2018 The Authors Publishing services by Elsevier B.V on behalf of Vietnam National University, Hanoi This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/)
1 Introduction
Fascinating properties such as electronic switching[1], molec-ular rectification[2e4], negative differential resistance behaviour [1,5]and single electron characteristics[6]have attracted the sci-entific community towards the study and modelling of electronic structure of an individual molecule or the group of molecules Various single molecular junctions have been investigated using scanning tunnelling microscope (STM), mechanically controllable break junction (MCBJ), and other techniques[7e9]in the last two decades by many research peers In the simple tunnelling model, the conductance of a single molecular junction depends on the extent of the hybridization and energy difference between the molecular and metal orbitals, the local density of states (LDOS) of the contact metal atoms at the Fermi level, and the degree ofp -conjugation [10].p-Conjugated molecules are expected to form high conductive wires[11]because molecular orbitals of them are connected through the molecular framework It is obvious that the small energy gap between the lowest unoccupied molecular orbital (LUMO) and the highest occupied molecular orbital (HOMO) is favourable for injection and tunnelling of charged carriers These experimental results and numerous contributions on charge
transport through molecular junctions [12,13] suggest that the transport characteristics are controlled by the intrinsic properties of the molecules, the contacts (“alligator clips”), and the metal leads These include the molecular length, conformation, the gap between HOMO and LUMO, the alignment of this gap to the metal Fermi level, temperature, mechanical stress and the metal-molecule coordination geometry
In most of the studies, the AueS bond has been used to connect molecules to metal electrodes, because stable molecular junctions can be easily obtained with this AueS covalent bond However, AueS bond is not always the best metal-molecule bond for the single molecular junction showing high conductivity Through our previously concluded results, we have already proved that selenol group can be an excellent alternative providing enhanced con-duction than that of thiol counterpart as AueSe bond is approxi-mately 0.25 eV stronger than the corresponding AueS bond[14] Thus, it is important to develop metal-molecule bonds other than AueS bond to establish highly conductive single molecular junc-tions[15] Martin et al.[16]in 2009 fabricated a molecular junction comprising 1, 4-bis(fulleropyrrolidin-1-yl)benzene with C60anchor groups and demonstrated more stable conductance than similar thiol-bonded molecules From the theoretical point of view, a serious challenge is to accurately predict quantum transport properties of atomic/molecular scale devices including the IeV curves, without any phenomenological parameters This goal, despite extensive research [17e38], has not yet been achieved satisfactorily
*Corresponding author
E-mail address:bhullar.rupan@gmail.com(R.P Kaur)
Peer review under responsibility of Vietnam National University, Hanoi
Contents lists available atScienceDirect
Journal of Science: Advanced Materials and Devices
j o u r n a l h o m e p a g e : w w w e l s e v i e r c o m / l o c a t e / j s a m d
https://doi.org/10.1016/j.jsamd.2018.02.003
(2)In this paper, we present a modelling technique which solves the theoretical challenge within thefirst principles density func-tional theory (DFT)[39e41]approach To make our problem hand clear, we consider our model based on using smaller fullerene cage C20as anchors at either ends of anthracene molecule stringed be-tween two gold electrodes The ultimate aim of this article is to investigate the electron transport through anthracene molecular junction using C20 as an anchoring endgroup The electronic transport properties of so-formed two probe model are adequately explained by considering the evolution of molecular orbitals, HOMOeLUMO gap (HLG), charge transferred and their relation with currentevoltage and conductance-voltage characteristics
2 Model
The framework adopted in this work is provided by Landauer model, a validated two probe model for a variety of molecular junctions Its transmission view is a generalization of circuit theory with the gold contacts being treated as a source of carriers, anal-ogous to voltage or current node in the classical circuit theory[42] The circuit plot of a two probe molecular junction is shown inFig 1, which is implemented in Atomistix tool kit[43], utilizing the non-equilibrium Green's function (NEGF) approach[44]combined with ab-initio density functional theory (DFT)[3,45e47] An active de-vice or extended molecule (EM) region is defined as the central bisfulleroanthracene molecule andfinite number of gold atoms on the surface of each involved gold electrode with miller plane (1,1,1) The calculation is performed using the BeckeePerdeweWang parameterization of density-functional theory within the generalized-gradient approximation (GGA) [48] and double-zeta polarized (DZP) basis set[49]for all the atoms to achieve accu-racy The proposed molecular junction device can be fabricated experimentally by using mechanically control break junction technique in which a small piece of a gold metallic wire isfixed on a flexible substrate, called a bending beam The cross section of gold wire is reduced between twofixed points by making a notch near the middle of the wire The bending substrate is normallyfixed at both ends by counter supports A vertical movement of the push rod can be precisely controlled by a piezoelectric actuator or motor which exerts a force on the bending beam As the beam is bent, the gold metal wire starts to elongate, which results in the reduction of the cross section at the notch andfinally results in a complete fracture of gold wire (1,1,1) After breaking the wire, two clean facing nanoelectrodes are generated The distance between the electrodes for both the opened and the closed directions is controlled by the bending or relaxing of the substrate, respectively After integrating bisfulleroanthracene molecule into the gap, they may bridge the two electrodes and the electronic properties of the molecule are further determined as explained below
The atomic structure of this model is optimised until its maximum residual force on all atoms is lesser than 0.02 eV/Å The
quantum calculations are performed along the transport direction and the Brillouin zone is sampled with 11100 points within MonkhorstePack k-point sampling The electrostatic potentials are determined on a read space grid with mesh cut-off energy of 75 Hartrees a.u to achieve balance between computational time and accuracy
The DFT-NEGF method employed in this work is explained as following steps[50]: i) The coupling between EM and electrodes is computed by Green's function and its energy integral gives the density matrix for equilibrium as well as non-equilibrium states ii) The transmission function T(E) is calculated from which current and conductance for a series of applied bias voltages are deter-mined by using Equations(1) and (2)respectively
IVị ẳ2e h$
ZmR mL
TEị ẵfEmLịefEmRịdE (1)
GVị ẳ dI
dVẳeẵgmL;Vị ỵ 1ịgmR;Vị ỵ
ZmL
mR
dgE;Vị dV (2)
wheremLandmRare the electrochemical potentials of left and right metal contacts respectively, gðm;VÞ is the Green's function and ȵ¼Vmol/V is the voltage division factor (ȵ¼0.5 for symmetric molecular junction shown inFig 1) We compute all the electronic transport metrics by varying the electrochemical potential within,2 V toỵ2 V The energy region betweenmLandmR, which contributes to the current integral above, is referred to as the bias window f (EmI); (I¼L for left lead and R for right lead) are the Fermi-Dirac distribution functions of the left and right electrodes, respectively
The above mentioned method is employed to compute electron transport metrics during equilibrium and non-equilibrium condi-tions, explained in the later section of paper
3 Results and discussion
The transport metrics required to foresee the quantum behav-iour of C20-Anthracene-C20 molecule bridged between two gold leads are studied for zero bias and variegated bias (2 V toỵ2 V) 3.1 Quantum transport at zero bias
The quantum transport calculations at zero bias help us to envision the electronic structure of the device under consideration, by a careful analysis of its density of states (DOS) and transmission spectra Both these parameters presage about the available quan-tum states in the vicinity of fermi energy (EF) Fig illustrates Lorentzian density of states and transmission spectra at zero bias
(3)Both these spectra portray the available number of quantum states around fermi energy and the probability whether a given energy state is occupied or unoccupied A series of peak with variation in magnitude of width and height detail its coupling strength
The resonance of HOMO and LUMO peaks below and above EF foresee their participation in assaying transmissions at zero bias and contributing to finite conductance of 7*102 G0 with HOMOeLUMO gap (HLG) of 0.6 eV This low value of HLG, relative to fermi level reflects the formation of strong coupling between C20 and gold electrodes at zero bias The comparison between the DOS and transmission spectra shown inFig 2a and b depicts a narrow HOMO peak at0.3 eV and the broader LUMO peak at 0.1e0.3 eV Broad LUMO resonance peak perceives its prominent contribution towards electron transport at zero bias Thus, perfect alignment between C20 fullerene and Au electrodes promotes the flow of electrons across the bridge and portrays the formation of strong coupling between the molecule and electrodes at zero bias as indicated by the molecular projected self-consistent eigen states shown inFig 3andTable
For the zero bias transmission spectra and DOS, the fermi level EFis located between two peaks of different character with a nar-row transmission peak below EFat0.3 eV with a transmission coefficient T(E) of 0.659 and a broader transmission peak centred around EEFat 0.1e0.3 eV with comparatively lower T(E) of 0.589 To analyze the origin of these transmission peaks, we proceed by calculating the eigen states of the device, as suggested by T Mar-kussen et al.[51] From the full Hamiltonian H and overlap matrix S of the two probe model, we project onto the subspace spanned by basis functions of the molecule
Fig 3shows the frontier orbitals relevant for the transmission around fermi energy It is inferred that the narrow transmission peak at0.3 eV is associated with a single HOMO eigen state of 115 at energy 0.227 eV This state results in vanishing orbital weight close to gold electrodes because of which its broadening is weak, resulting in a narrow transmission peak DOS shown in Fig 2a further asserts the origin of narrow transmission peak at0.3 eV from the HOMO state, which provides a clear corre-spondence to the transmission function However, broader reso-nant peak at 0.1 eVe0.3 eV results from six states LUMO, LUMOỵ1, LUMOỵ2, LUMOỵ3, LUMOỵ4 and LUMOỵ5 as shown inFig On one hand, the highly transmitting HOMO state is only weakly coupled to gold electrodes resulting in narrow transmission peak with small overlap with fermi energy On the other hand, six lowest unoccupied states are strongly coupled to gold electrodes via C20 fullerene molecule leading to broad transmission peaks but with comparatively smaller peak values The contribution of single HOMO and six LUMO states is attributed to the robust binding of anthracene molecule to gold electrodes by using C20 fullerene
Similar results were concluded by T Markussen et al.[51] while using C60fullerene as anchors to bind benzene with gold elec-trodes Thus, electron tunnelling at zero bias across the molecular bridge occurs via LUMO states of C20and C60anchoring groups, pinned close to fermi energy
3.2 Quantum transport at discrete bias
To enquire the electronic transport characteristics during non-equilibrium conditions, we vary the bias voltage from2 V toỵ2 V to drive the system out of equilibrium The transmission spectrum is studied to investigate about theflow of charge resulting in the flow of current in the device It reveals the strength of electron transport under variegated bias voltages (supplementary mate-rial) It is composed of series of peaks whose centres correspond to the conducting state of the junction whereas width and height reflects how strongly the state is coupled to the contacts It shows the coupling between the electrodes and the molecule that leads to overlapping of the hybridized orbitals and a change in HOMOeLUMO gaps The stronger the coupling, more the orbitals are broadened and lesser will be the energy gap to jump for electrons [52] Sharp peaks in the spectrum show maximum transmissions (smaller HOMOeLUMO gap) whereas flatness shows minimum transmissions (greater HOMOeLUMO gap) The resistivity dipoles form due to charge build up in the junction and because of this differing polarization caused by metal contacts, leads to the spread in curves despite the fact that all junctions have same molecule[53,54] The resonant transmission peaks below and above fermi level, HOMO and LUMO respectively, are responsible for the charge transfer and hence participates in conduction
Fig 4presents the computed IeV characteristics of bisfuller-oanthracene molecule bonded to gold electrodes As depicted in figure, we consider low bias (±0.4 V) and high bias (±2 V) voltages, two categories of bias voltage are considered to explain the linear characteristics and non-linearity in IeV curves respectively Local-ization and de-localLocal-ization of molecular orbitals as shown inFig results in theflow of current The HLG of molecular junction under consideration ranges from 0.07 eV to 0.68 eV which depicts the metallic nature of the Au-bisfulleroanthracene-Au organic device As the bias voltage is varied from2 V toỵ2 V, current increases on account of conduction due to non-resonant tunnelling The currentevoltage characteristics portray coulomb staircase behaviour with little non-linearity at transitory voltage points1.6 V,0.8 V, 0.4 V, 1.2 V and 1.6 V This switching of IeV characteristics from linearity to non-linearity is found on account of transitions in charge transfer from one orbital state to other as shown inTable The linear curve shown during0.4 V toỵ0.4 V is on account of charge transfer from gold electrodes to central molecule through lowest unoccupied molecular orbital which then switches through highest occupied molecular state as the bias voltage is varied to 0.8 Ve1.2 V which further rolls back through LUMO state at 1.6 V and V The study of IeV characteristics is followed by examining its rectification mechanism which is explained below as shown inFig 4b
To study the amount of asymmetry in IeV characteristics of the two probe device, we determine the rectification ratio (RR) exhibited by device (Fig 4b) which is found to be wiggling from 0.9 to as shown inTable with least value of 0.993 at±2 V and maximum value of 1.009 at±0.8 V which indicates the least sym-metric and most symsym-metric coupling points respectively in the slope of IeV characteristics shown inFig 4a From the values of RR shown inTable 3, it is inferred that the IeV characteristics are almost symmetric about zero bias voltage
(4)As the bias voltage is varied from forward to reverse bias, mo-lecular transmission resonance enters the bias window, and the corresponding increase in current as suggested by K Stokbro et al [55]is expressed as:
IVỵdVị ẳIVị þG0
T
eV
ỵT
eV
dV
2 (3)
The molecular orbitals portray shift in energy as the bias voltage is varied which can be observed inFig 5where HOMO exhibits major delocalization from0.53 eV to 0.04 eV whereas LUMO displays delocalized energy states from 0.029 eV to 0.335 eV Linear slope in IeV characteristics from0.4 V toỵ0.4 V can be under-stood by exploring the position of molecular orbitals during±0.4 V
where least injection gap is explicitly observed During this bias range, HOMO and LUMO orbitals pin to fermi energy with least energy gap of 0.0415 eV and 0.03 eV at 0.4 V These orbitals switch to 0.227 eV and 0.0293 eV at zero bias and transit to 0.0415 eV and 0.0297 eV at ỵ0.4 V This is the reason why maximum chargeflow from electrodes to the molecule as depicted in Fig 6b is witnessed at0.4 V, V andỵ0.4 V At other bias voltage points, fermi level pinning of electrodes to the central molecule is found to be imperfect on account of larger injection gap resulting in lesser charge flow from gold electrodes to bisfuller-oanthracene molecule Further, we correlated the results deduced fromTable 2andFig 5and they were found to be analogous to each other With variation in bias voltage from2 V toỵ2 V, fermi level pining of gold electrodes with either HOMO or LUMO results in chargeflow between molecule and electrodes The closer position of MOs (HOMO/LUMO) relative to Ef decides the active MO Maximum conductance at±2 V is on account of perfect alignment of LUMO orbital with fermi level as LUMO is concluded to be the active MO at these high bias points As the bias voltage is switched from2 V to1.2 V, LUMO displaced away from Efresulting in drop Fig 3.MPSH eigen states of the device at zero bias
Table
MPSH orbital energy relative to EFtaken as eV
HOMO LUMO LUMOỵ1 LUMOỵ2 LUMOỵ3 LUMOỵ4 LUMOỵ5
0.227 eV 0.0293 0.0521 0.0961 0.0994 0.188 0.2456
(5)in conductance Similarly, the conductance spectrum shows rising conductance from 1.2 V to V as LUMO shifts closer to Ef
Another electrical attribute of the nanoscale device is the dif-ferential conductance shown in Fig 7which is obtained by nu-merical differentiation of the IeV curve The conductance spectrum
shown inFig 7demonstrates the variation in conductance ranging from 0.07G0 to 0.35G0, with least equilibrium conductance of 5.45mS whereas maximum conductance of approximately 27mS at
±2 V To explore the reason of the same, we compute the mulliken charges on the central molecule and the electron density as the function of bias voltage The charge transfer analysis (Fig 6b) de-picts almost a similar curve as obtained in the conductance spec-trum Thus, differential conductance, electron density and mulliken charges on the molecule are inter-related to each other
The magnitude of charge transferred towards the molecule varies from 0.212 e to 0.247 e but with number of electrons more than 232 as shown inFig 7b Though the electron density is more than 232, but the electrons near the leading edge of fermi energy participate in the transport phenomenon[56] Maximum charge transfer to molecule due to maximum electron density takes place at±2 V and minimum diffusion of charge is observed at zero bias with minimum electron density It is inferred that the least accu-mulation of charge at zero bias poses inability in lifting of Coulomb blockade which results in least zero bias conductance Thus,±2 V are the bias voltage points where the coupling between molecule and electrodes is strongest whereas zero bias point demonstrates weak coupling regime Moreover, the transition in active molecular orbital with changing bias decides the slope of conductance curve as well[56] As seen in the conductance spectrum, we observe two Fig 5.Delocalization of HOMO and LUMO orbitals as a function of bias voltage
Table
Evolution of molecular orbitals (MO) at different bias voltages
Bias voltage MO Bias voltage MO
2 V LUMO 0.4 V LUMO
1.6 V LUMO 0.8 V HOMO
1.2 V HOMO 1.2 V HOMO
0.8 V HOMO 1.6 V LUMO
0.4 V LUMO V LUMO
0 V LUMO e e
Table
RR for applied bias voltages
±V RR ±V RR
0.4 V 1.006 1.6 V 1.007
0.8 V 1.009 V 0.993
1.2 V 1.002 e e
(6)major troughs at 0.8 V and ỵ0.8 V At these two bias points, quantum transport conductance switches from HOMO to LUMO and back to HOMO from LUMO as shown inTable
In all the transport metrics discussed above, we witness major resemblance in the transport conditions at high bias voltage points
±2 V Thus, to explore this similarity, we study the transmission spectra at2 V andỵ2 V shown inFig The transmission peaks portrayed during the entire energy range at2 V andỵ2 V look similar, with almost same broadness and transmission peak values The transmission coefficients at fermi level are obtained as 0.0033 for both V and ỵ2 V We also know that the current and conductance are computed by integrating the transmission area within the bias window and since the spectra are similar, thus their I (V) and G (V) values are calculated to be approximately 14mA and 27mS as demonstrated inFigs 4a and 7a
4 Conclusion
We investigated the equilibrium and non-equilibrium transport behaviour of a robust C20fullerene anchored molecular junction by using the DFT-NEGF computational approach The DOS, trans-mission spectra, molecular orbital analysis, current spectrum,
conductance spectrum and mulliken population analysis are computed which show good agreement with each other Our major results includefive points: First, zero bias conductance is mainly determined by six unoccupied states LUMO to LUMOỵ5 lying close in energy 0.03e0.25 eV relative to fermi level These states are responsible for the broad transmission peaks shown in zero bias transmission spectra Secondly, the shifting of molecular orbitals by varying bias voltage determines the current spectrum Thirdly, the non-linearity in IeV curve and troughs in GeV curve are attributed to the transitions seen in the active molecular orbitals with variegated bias voltage Fourth, mulliken charges on the central molecule and electron density as a function of bias voltage are closely related to conductance spectrum Lastly, the symmetric conductance spectrum around V with almost equivalent values at forward as well as reverse bias points is on account of their analogous transmission spectra accounting for the quantumflow and transport metrics
Appendix A Supplementary data
Supplementary data related to this article can be found at https://doi.org/10.1016/j.jsamd.2018.02.003
Fig 7.a) dI/dV characteristics of the device during non-equilibrium conditions b) Number of electrons as a function of bias voltage
(7)References
[1] L Yu, Z Keane, J Ciszek, L Cheng, J Tour, T Baruah, M Pederson, D Natelson, Kondo resonances and anomalous gate dependence in the electrical conduc-tivity of single-molecule transistors, Phys Rev Lett 95 (2005) 256803 [2] A Aviram, M.A Ratner, Molecular rectifiers, Chem Phys Lett 29 (1974)
277e283
[3] J Taylor, M Brandbyge, K Stokbro, Theory of rectification in tour wires: the role of electrode coupling, Phys Rev Lett 89 (2002) (1338301-1e138301-4) [4] K Konstadinidis, P Zhang, R.L Opila, D.L Allara, An in-situ X-ray photoelec-tron study of the interaction between vapor-deposited Ti atoms and func-tional groups at the surfaces of self-assembled monolayers, Surf Sci 338 (1995) 300e312
[5] R.P Andres, S Datta, D.B Janes, C.P Kubiak, R Reifenberger, in: H.S Nalwa (Ed.), Handbook of Nanostructured Materials and Nanotechnology, vol 3, Academic Press, New York, 2000, pp 179e231
[6] J Chen, L.C Calvet, M.A Reed, D.W Carr, D.S Grubisha, D.W Bennett, Elec-tronic transport through metale1,4-phenylene diisocyanideemetal junctions, Chem Phys Lett 313 (1999) 741
[7] M.A Reed, C Zhou, C.J Muller, T.P Burgin, J.M Tour, Conductance of a mo-lecular junction, Science 278 (1997) 252
[8] B Xu, N.J Tao, Measurement of single-molecule resistance by repeated for-mation of molecular junctions, Science 301 (2003) 122
[9] N.J Tao, Electron transport in molecular junctions, Nat Nanotechnol (2006) 173
[10] T Tada, D Nozaki, M Kondo, S Hamayama, K Yoshizawa, Oscillations of conductance in molecular junctions of carbon ladder compounds, J Am Chem Soc 126 (2004) 14182e14189
[11] A Salomon, D Cohen, S Lindsay, J Tomfohr, V.B Engelkes, C.D Frisbie, Comparison of electronic transport measurements on organic molecules, Adv Mater 15 (2003) 1881e1890
[12] Nitzan, M.A Ratner, Electron transport in molecular wire junctions, Science 300 (2003) 1384
[13] W Tian, S Datta, S Hong, R Reifenberger, J.I Henderson, C.P Kubia, Conductance spectra of molecular wires, J Chem Phys 109 (1998) 2874 [14] S Yasuda, S Yoshida, J Sasaki, Y Okutsu, T Nakamura, A Taninaka,
O Takeuchi, H Shigekawa, Bondfluctuations of S/Se anchoring observed in single molecule conductance, in: Proceedings of 4th 2006 IEEE 4th World Conference on Photovoltaic Energy Conversion, 2006, pp 158e161 [15] Manabu Kiguchi, Kei Murakoshi, Highly conductive single molecular junctions
by direct binding ofp-conjugated molecule to metal electrodes, Thin Solid Films 518 (2009) 466e469
[16] Christian A Martin, Dapeng Ding, Jakob Kryger Sørensen, Thomas Bjørnholm, Jan M van Ruitenbeek, Herre S.J van der Zant, Fullerene-based anchoring groups for molecular electronics, J Am Chem Soc 130 (2008) 13198e13199 [17] R.H.M Smit, C Untiedt, A.I Yanson, J.M van Ruitenbeek, Common origin for surface reconstruction and the formation of chains of metal atoms, J Phys Rev.Lett 87 (2001) 266102
[18] W Tian, S Datta, S Hong, R Reifenberger, J.I Henderson, Resistance of mo-lecular nanostructures, Physica E (1997) 304
[19] E Emberly, G Kirczenow, Electrical conductance of nanowires, Nanotech-nology 10 (1999) 285
[20] M Di Ventra, S.T Pantelides, N.D Lang, First-principles calculation of trans-port properties of a molecular device, Phys Rev Lett 84 (2000) 979 [21] U Durig, O Zuger, B Michel, L Haussling, H Ringsdorf, Electronic and
me-chanical characterization of self-assembled alkanethiol monolayers by scan-ning tunneling microscopy combined with interaction-force-gradient sensing, Phys Rev B 48 (1993) 1711
[22] Y Xue, S Datta, Fermi-level alignment at metal-carbon nanotube interfaces: application to scanning tunneling spectroscopy, Phys Rev Lett 83 (1999) 4844
[23] E.G Emberly, G Kirczenow, Electron standing-wave formation in atomic wires, Phys Rev B 60 (1999) 6028
[24] M Brandbyge, J.-L Mozos, P Ordejon, J Taylor, K Stokbro, Density-functional method for nonequilibrium electron transport, Phys Rev B 65 (2002) 165401 [25] V Rodrigues, T Fuhrer, D Ugarte, Signature of atomic structure in the
quantum conductance of gold nanowires, Phys Rev Lett 85 (2000) 4124 [26] A Kharlamov, G Kharlamova, M Bondarenki, V Fomenko, Joint synthesis of
small carbon molecules (C 3-C 11), quasi-fullerenes (C 40, C 48, C 52) and their hydrides, Chem Eng Sci (3) (2013) 32e40
[27] Jerzy Leszczynski, Handbook of Computational Chemistry, Springer, 2012 [28] Marcela F Dinca, Simona Ciger, Monica Stefu, F Gherman, Katalin Miklos,
Csaba L Nagy, Oleg Ursu, Mircea V Diudea, Stability prediction in C40 ful-lerenes, Carpathian J Math 20 (2) (2004) 211
[29] Jimei Xiao, Menghai Lin, Ying-Nan Chiu, Manzheng Fu, Shan-Tao Lai, N.N Li, The structures of fullerene C40and its derivatives, J Mol Struct THEOCHEM
428 (1e3) (1998) 149e154, 23
[30] Brian Capozzi, Jianlong Xia, Olgun Adak, Emma J Dell, Zhen-Fei Liu, Jeffrey C Taylor, Jeffrey B Neaton, Luis M Campos, Latha Venkataraman, Single-molecule diodes with high rectification ratios through environmental control, Nat Nanotechnol 10 (2015) 522e527
[31] H.J Choi, J Ihm,Ab initiopseudopotential method for the calculation of conductance in quantum wires, Phys Rev B 59 (1999) 2267
[32] H.J Choi, J Ihm, Y.G Yoon, S.G Louie, Broken symmetry and pseudogaps in ropes of carbon nanotubes, Phys Rev B 60 (1999), 14 009
[33] H.J Choi, J Ihm, S.G Louie, M.L Cohen, Defects, quasibound states, and quantum conductance in metallic carbon nanotubes, Phys Rev Lett 84 (2000) 2917
[34] N.D Lang, Resistance of atomic wires, Phys Rev B 52 (1995) 5335 [35] K Hirose, M Tsukada, First-principles calculation of the electronic structure
for a bielectrode junction system under strongfield and current, Phys Rev B 51 (1995) 5278
[36] N.D Lang, Conduction through single Mg and Na atoms linking two macro-scopic electrodes, Phys Rev B 55 (1997) 4113
[37] N.D Lang, Ph Avouris, Oscillatory conductance of carbon-atom wires, Phys Rev Lett 81 (1998) 3515
[38] N.D Lang, Ph Avouris, Carbon-atom wires: charge-transfer doping, voltage drop, and the effect of distortions, Phys Rev Lett 84 (2000) 358
[39] P Hohenberg, W Kohn, Inhomogeneous electron gas, Phys Rev 136 (1964) 864
[40] W Kohn, L.J Sham, Self-consistent equations including exchange and corre-lation effects, Phys Rev 140 (1965) 1133
[41] R.G Parr, W Yang, Density-Functional Theory of Atoms and Molecules, Oxford University Press, New York, 1989
[42] Y Xue, M.A Ratner, Theoretical principles of single-molecule electronics: a chemical and mesoscopic view, Int J Quantum Chem 102 (2005) 911 [43] Atomistic Toolkit Manual, Quantumwise Inc
[44] X Xiao, B Xu, N.J Tao, Measurement of single molecule conductance: Ben-zenedithiol and Benzenedimethanethiol, Nano Lett (2004) 267
[45] Michael Galperin, Abraham Nitzan, Mark A Ratner, Inelastic effects in mo-lecular junctions in the Coulomb and Kondo regimes: nonequilibrium equation-of-motion approach, Phys Rev B 76 (2007) 035301
[46] Y Xue, M.A Ratner, Microscopic study of electrical transport through indi-vidual molecules with metallic contacts I Band lineup, voltage drop, and high-field transport, Phys Rev B 68 (2003) 115407/1
[47] J Taylor, H Guo, J Wang,Ab initiomodeling of quantum transport properties of molecular electronic devices, Phys Rev B 63 (2001) 245407
[48] a) J.P Perdew, K Burke, M Ernzerhof, Generalized gradient approximation made simple, Phys Rev Lett 77 (1996) 3865;
b) J.P Perdew, K Burke, M Ernzerhof, Erratum to generalized gradient approximation made simple, Phys Rev Lett 78 (1997), 1396 (E)
[49] https://en.wikipedia.org/wiki/Basis_set_(chemistry)
[50] a) John W Lawson, Charles W Bauschlicher Jr., Transport in molecular junctions with different metallic contacts, Phys Rev B 74 (2006) 125401;
b) S Datta, Electronic Transport in Mesoscopic Systems, Cambridge University Press, Cambridge, UK, 1995
[51] T Markussen, Mikkel Settnes, Kristian S Thygesen, Robust conductance of dumbbell molecular junctions with fullerene anchoring groups, J Chem Phys 135 (2011) 144104
[52] Y Xue, M.A Ratner, Microscopic study of electrical transport through indi-vidual molecules with metallic contacts I Band lineup, voltage drop, and high-field transport, Phys Rev B 68 (2003) 115406
[53] R Landauer, Spatial variation of currents andfields due to localized scatterers in metallic conduction, IBM J Res Dev (223) (1957) 32, 306(1988) [54] Rupan Preet Kaur, Ravinder Singh Sawhney, Derick Engles, Augmenting
mo-lecular junctions with different transition metal contacts, J Multiscale Model (JMM) (2) (2014) 1350009
[55] K Stokbro, J Taylor, M Brandbyge, J.L Mozos, P Ordejon, Theoretical study of the nonlinear conductance of Di-thiol benzene coupled to Au (111) surfaces via thiol and thiolate bonds, Comput Mater Sci 27 (1) (2003) 151e160 [56] a) Rupan Preet Kaur, Ravinder Singh Sawhney, Derick Engles, Effect of gold
electrode crystallographic orientations on charge transport through aromatic molecular junctions, Mol Phys 114 (15) (2016) 2289e2298,https://doi.org/ 10.1080/00268976.2016.1197431;
(http://creativecommons.org/licenses/by/4.0/ ScienceDirect w w w e l s e v i e r c o m / l o c a t e / j s a m d 212 L Yu, Z Keane, J Ciszek, L Cheng, J Tour, T Baruah, M Pederson, D Natelson,Kondo resonances and anomalous gate dependence in the electrical 283. J Taylor, M Brandbyge, K Stokbro, Theory of rectifi 312 231. J Chen, L.C Calvet, M.A Reed, D.W Carr, D.S Grubisha, D.W Bennett, Elec-tronic transport through metal M.A Reed, C Zhou, C.J Muller, T.P Burgin, J.M Tour, Conductance of a mo-lecular junction, Science 278 (1997) 252 B Xu, N.J Tao, Measurement of single-molecule resistance by repeated for-mation of molecular junctions, Science 301 (2003) 122 N.J Tao, Electron transport in molecular junctions, Nat Nanotechnol (2006)173 14189. 1890 Nitzan, M.A Ratner, Electron transport in molecular wire junctions, Science300 (2003) 1384 W Tian, S Datta, S Hong, R Reifenberger, J.I Henderson, C.P Kubia,Conductance spectra of molecular wires, J Chem Phys 109 (1998) 2874 S Yasuda, S Yoshida, J Sasaki, Y Okutsu, T Nakamura, A Taninaka,O Takeuchi, H Shigekawa, Bond 469. 13199 R.H.M Smit, C Untiedt, A.I Yanson, J.M van Ruitenbeek, Common origin forsurface reconstruction and the formation of chains of metal atoms, J Phys. W Tian, S Datta, S Hong, R Reifenberger, J.I Henderson, Resistance of mo-lecular nanostructures, Physica E (1997) 304 E Emberly, G Kirczenow, Electrical conductance of nanowires, Nanotech-nology 10 (1999) 285 M Di Ventra, S.T Pantelides, N.D Lang, First-principles calculation of trans-port properties of a molecular device, Phys Rev Lett 84 (2000) 979 U Durig, O Zuger, B Michel, L Haussling, H Ringsdorf, Electronic and me-chanical characterization of self-assembled alkanethiol monolayers by 4844 E.G Emberly, G Kirczenow, Electron standing-wave formation in atomicwires, Phys Rev B 60 (1999) 6028 M Brandbyge, J.-L Mozos, P Ordej V Rodrigues, T Fuhrer, D Ugarte, Signature of atomic structure in thequantum conductance of gold nanowires, Phys Rev Lett 85 (2000) 4124 A Kharlamov, G Kharlamova, M Bondarenki, V Fomenko, Joint synthesis ofsmall carbon molecules (C 3-C 11), quasi-fullerenes (C 40, C 48, C 52) and their Jerzy Leszczynski, Handbook of Computational Chemistry, Springer, 2012. Marcela F Dinca, Simona Ciger, Monica Stefu, F Gherman, Katalin Miklos,Csaba L Nagy, Oleg Ursu, Mircea V Diudea, Stability prediction in C40 154, 23. 527. H.J Choi, J Ihm,Ab initio H.J Choi, J Ihm, Y.G Yoon, S.G Louie, Broken symmetry and pseudogaps inropes of carbon nanotubes, Phys Rev B 60 (1999), 14 009 2917. N.D Lang, Resistance of atomic wires, Phys Rev B 52 (1995) 5335 K Hirose, M Tsukada, First-principles calculation of the electronic structurefor a bielectrode junction system under strong N.D Lang, Conduction through single Mg and Na atoms linking two macro-scopic electrodes, Phys Rev B 55 (1997) 4113 N.D Lang, Ph Avouris, Oscillatory conductance of carbon-atom wires, Phys.Rev Lett 81 (1998) 3515 N.D Lang, Ph Avouris, Carbon-atom wires: charge-transfer doping, voltagedrop, and the effect of distortions, Phys Rev Lett 84 (2000) 358 P Hohenberg, W Kohn, Inhomogeneous electron gas, Phys Rev 136 (1964)864 W Kohn, L.J Sham, Self-consistent equations including exchange and corre-lation effects, Phys Rev 140 (1965) 1133 R.G Parr, W Yang, Density-Functional Theory of Atoms and Molecules, OxfordUniversity Press, New York, 1989 Y Xue, M.A Ratner, Theoretical principles of single-molecule electronics: achemical and mesoscopic view, Int J Quantum Chem 102 (2005) 911 X Xiao, B Xu, N.J Tao, Measurement of single molecule conductance: Ben-zenedithiol and Benzenedimethanethiol, Nano Lett (2004) 267 Michael Galperin, Abraham Nitzan, Mark A Ratner, Inelastic effects in mo-lecular junctions in the Coulomb and Kondo regimes: nonequilibrium Y Xue, M.A Ratner, Microscopic study of electrical transport through indi-vidual molecules with metallic contacts I Band lineup, voltage drop, and J Taylor, H Guo, J Wang,Ab initio a) J.P Perdew, K Burke, M Ernzerhof, Generalized gradient approximationmade simple, Phys Rev Lett 77 (1996) 3865 b) J.P Perdew, K Burke, M Ernzerhof, Erratum to generalized gradientapproximation made simple, Phys Rev Lett 78 (1997), 1396 (E) https://en.wikipedia.org/wiki/Basis_set_(chemistry) a) John W Lawson, Charles W Bauschlicher Jr., Transport in molecularjunctions with different metallic contacts, Phys Rev B 74 (2006) 125401 b) S Datta, Electronic Transport in Mesoscopic Systems, Cambridge UniversityPress, Cambridge, UK, 1995 T Markussen, Mikkel Settnes, Kristian S Thygesen, Robust conductance ofdumbbell molecular junctions with fullerene anchoring groups, J Chem Phys. Y Xue, M.A Ratner, Microscopic study of electrical transport through indi-vidual molecules with metallic contacts I Band lineup, voltage drop, and R Landauer, Spatial variation of currents andfi Rupan Preet Kaur, Ravinder Singh Sawhney, Derick Engles, Augmenting mo-lecular junctions with different transition metal contacts, J Multiscale Model. 160 https://doi.org/10.1080/00268976.2016.1197431 b) R.P Kaur, R.S Sawhney, D Engles, Effect of asymmetric molecule-electrodecoupling and molecular bias on recti