Computational methods for identifying conserved protein complexes between species from protein interaction data

... thesis A survey on computational methods for identifying conserved protein complexes between species: in this survey, computational methods for identifying conserved protein complexes are grouped ... present a definition for the problem of identifying conserved protein complexes between species from protein interaction data We then review t...

Ngày tải lên: 01/10/2015, 17:27

... thesis A survey on computational methods for identifying conserved protein complexes between species: in this survey, computational methods for identifying conserved protein complexes are grouped ... present a definition for the problem of identifying conserved protein complexes between species from protein interaction data We then review t...

Ngày tải lên: 03/10/2015, 21:56

... thesis A survey on computational methods for identifying conserved protein complexes between species: in this survey, computational methods for identifying conserved protein complexes are grouped ... present a definition for the problem of identifying conserved protein complexes between species from protein interaction data We then review t...

Ngày tải lên: 04/10/2015, 07:57

... significantly to determining folding rates for a given contact order Moreover, for 14 slow -folding proteins with high contact orders (mixed-a/b and b-sheet proteins), the free energy of unfolding can be used ... by protein engineering methods: Evidence for a nucleation– condensation mechanism for protein folding J Mol Biol 254, 260–288 (1995) 72 Z Guo, C L Brooks III, and E...

Ngày tải lên: 11/04/2014, 01:33

... SVNY330-Xu-Vol-I November 4, 2006 10:1 Ying Xu, Dong Xu, and Jie Liang (Eds.) Computational Methods for Protein Structure Prediction and Modeling Volume 1: Basic Characterization iii SVNY330-Xu-Vol-I November ... accomplishments, and potential for the future Chapter (A Historical Perspective and Overview of Protein Structure Prediction) gives a perspective...

Ngày tải lên: 27/06/2014, 10:20

... co-expression and GO distance, which are noisy sensors for the actual interaction variable Tij.I Note that an actual interaction variable may have several observation variables if the pair appears in ... standard non-interactions, and a total of 108,924 observations (Figure S8 in Additional data file 2) non-interactions [35] and removed those that appear in any interaction assays We...

Ngày tải lên: 14/08/2014, 08:20

... This page intentionally left blank COMPUTATIONAL METHODS FOR MULTIPHASE FLOW Predicting the behavior of multiphase flows is a problem of immense importance for both industrial and natural processes ... models for multiphase flows 157 S Chen, X He and L.-S Luo Boundary integral methods for Stokes flows 193 J Blawzdziewicz Averaged equations for multiphase flow 237 A Prosp...

Ngày tải lên: 01/04/2014, 10:46

... incorrect The forward Euler scheme is stable only for sufficiently small time steps – namely, for ∆t < ∆tmin (stability condition for the forward Euler scheme) (2.18) Schemes that are stable only for a ... mathematical formulation of the problem at hand and a computational method The formulation tells us what to solve and the computational method tells us how to solve it Frequently...

Ngày tải lên: 04/06/2014, 14:52

... percent of cells in cell cycle phases G1, S, and G2/M, respectively In this section, we present two computational methods for estimation of the cell cycle phase distribution of a yeast cell population ... Number of cells 250 Number of cells 250 200 Number of cells 250 150 100 50 0.2 0.4 0.6 0.8 150 100 50 0.2 Cell cycle phase 0.4 0.6 0.8 0.2 Cell cyc...

Ngày tải lên: 22/06/2014, 19:20

... et al.: Diagnostic accuracy of existing methods for identifying diabetic foot ulcers from inpatient and outpatient datasets Journal of Foot and Ankle Research 2010 3:27 Submit your next manuscript ... of Foot and Ankle Research 2010, 3:27 http://www.jfootankleres.com/content/3/1/27 Page of Table Comparison of methods for diagnostic accuracy of...

Ngày tải lên: 10/08/2014, 21:24

... conventional and molecular detection methods of pathogen; (2) bioinformatics and cheminformatics in drug discovery; (3) database development; (4) virtual screening of drug discovery; (5) objectives and ... efficient and effective To help achieve this purpose, this work on "Development of Database and Computational Methods for Disease Detection and...

Ngày tải lên: 10/09/2015, 09:04

... that sharp interface formulation 2.5 Application of Phase Field Methods: A variety of material processing applications have been comfortably handled by Phase- field models The application of phase- field ... The average grain area and total time taken as function of time for operator splitting case 60 5.16 The average grain area and total time taken as function of...

Ngày tải lên: 03/10/2015, 21:56

... determination is the spectral assignment procedure This involves sequence-specific resonance assignment of NMR signals and the assignment of NOESY spectra Resonance assignment forms the basis for characterizing ... obtain the assignments of the Cα and CO of the same residue Then, the CO frequency is used to obtain assignments for the HN and 15N of...

Ngày tải lên: 04/10/2015, 15:52

... completeness of information obtained from abstracts in comparison to the full-length articles as a measure of reliability of abstracts as sources of protein interaction data METHODS Selection of articles ... (proprietary protein interactions maps database from Jubilant Biosys Ltd.) was used IMaps is a manually curated database with more than 200 000 protein- protein,...

Ngày tải lên: 22/06/2014, 19:20