Báo cáo sinh học: "Inverse folding of RNA pseudoknot structures'''''''' ppt

... Representations of RNA structures. The pseudoknot structure of the glmS ribozyme pseudoknot P1.1 [40] as a diagram (top) and as a planar graph (bottom). Figure 2 s-canonical RNA structure. Each stack of “parallel” ... particulars of the local search itself. As discussed in the introduction it has to be given an argument as to why the inverse folding of pseudoknot RNA s...

Ngày tải lên: 12/08/2014, 17:20

... analysis of RNA- RNA interactions; how- ever, computational prediction of RNA- RNA interactions is also essential for the identification of putative targets of known and de novo predicted ncRNAs. ... Many regulatory non-coding RNAs (ncRNAs) function through complementary binding with mRNAs or other ncRNAs, e.g., microRNAs, snoRNAs and bacterial sRNAs. Predicting these RNA interac...

Ngày tải lên: 12/08/2014, 17:20

... Prediction accuracy of competitive RNA- RNA binding sites prediction methods. Sensitivity PPV F-measure RNA- RNA interaction pairs inRNAs IntaRNA RNAup inRNAs IntaRNA RNAup inRNAs IntaRNA RNAup CopA-CopT ... 9 of 10 RESEARC H Open Access Fast prediction of RNA- RNA interaction Raheleh Salari 1 , Rolf Backofen 2 , S Cenk Sahinalp 1* Abstract Background: Regulatory antisense RNAs are a...

Ngày tải lên: 12/08/2014, 17:20

... ratio of the relative intensity of growth of transformed variable 0 (= yn) and degree of maturity expressed as 1- (() / An); this ratio estimates the maturation rate of the ... definition of which includes both absolute values of body weight Our results on the comparative analysis of growth curves of these species confirmed the earline...

Ngày tải lên: 09/08/2014, 18:22

... viral genomic RNAs by the viral RNA- dependent RNA polymerase. The RNP structure is a unique feature of negative strand RNA viruses such that the polymerase complex can only copy the RNA sequence ... end of the VSV C-terminal domain. The RNA binding cavity of the VSV N protein (red) with highlighting the positively charged residues that interact with the RNAFigure 6 The RNA...

Ngày tải lên: 18/06/2014, 18:20

... Journal 2007, 4:105 http://www.virologyj.com/content/4/1/105 Page 2 of 8 (page number not for citation purposes) ent RNA polymerase L [6,10]. The complex of VP35 and L acts as the active RNA- dependent ... critical for the homooligomerization of NP, formation of NP-induced intracellular inclusions, interac- tion of NP with VP35 and for the function of NP in RNA synthesis. Mat...

Ngày tải lên: 18/06/2014, 18:20

... in detectible RNA. Effect of incubation temperature and time on DNA degradation and RT-PCR amplification of RNA The effect of temperature on DNA degradation and RNA amplification in the presence of UNG ... addition to rapid quantification of template RNA, real-time PCR and RT- PCR offers significant advantages over standard PCR and RT-PCR for detection of DNA or RNA in t...

Ngày tải lên: 19/06/2014, 08:20

... 12:780-794. http://jbiol.com/content/2/4/25 Journal of Biology 2003, Volume 2, Issue 4, Article 25 Pollard 25.5 Journal of Biology 2003, 2:25 http://jbiol.com/content/2/4/25 Journal of Biology 2003, Volume 2, Issue ... disruption of the central spindle, but depletion of two other kinesins had no effect on cytokinesis in spite of the ability of mutations in the respective genes t...

Ngày tải lên: 06/08/2014, 18:20

... one as well as the sum of the elements of the sire block (first two columns of Q i ) and the sum of the elements of the dam block (last two columns of Q i ). The Q i matrices are of key importance, ... informative matings the paternal or maternal ori- gin of gametes can be identified by one or several markers in the surroundings of the QTL. The QTL-allele on the paternal (mate...

Ngày tải lên: 14/08/2014, 13:22

... data file 1). RNA folding energy and cell temperature One of the factors that determine RNA folding energy is tem- perature. If viral RNA and mRNA folding energy affects the efficiency of viral infection ... (PB2, PB1, PA) of the 1918 A/ H1N1 virus were of avian origin, since they are outside of the spectrum of the A/H1N1 folding energies and in the lower spectrum o...

Ngày tải lên: 14/08/2014, 21:20