x chip an integrated platform for high throughput protein crystallography

... Judith L Klavans, and Evelyne Tzoukermann 1997 Expansion of multiword terms for indexing and retrieval using morphology and syntax In Proceedings, 35th Annual Meeting of the Association for Computational ... vary through lexical changes without significant structural modifications For example NPNSynt: didates is to group the output of LEXTER, by conflating term candidates with other term candidates instead ... and semantic variations are two other important families of term variations which can also be extracted by FASTR They will be accounted for in order to enhance the number of clustered term candidates...

Ngày tải lên: 24/03/2014, 03:20

... regarding the chip- based genotyping platforms 128 128 4.1.1 Comparison between APEX and AsPEX 129 4.1.2 Comparisons between APEX/AsPEX and commercial chip- based genotyping platforms 131 4.1.3 ... between APEX/AsPEX and other genotyping techniques 133 4.1.4 Useful tips for the design of APEX/AsPEX DNA chip 135 4.1.5 Analyses of fluorescence intensity 138 4.1.6 Limitations of APEX and AsPEX 139 ... between APEX and AsPEX 125 x Table 3.10 Respective signal intensity ratio of paired AsPEX primers with balanced concentrations 127 Table 4.1 The comparison between APEX and AsPEX methods 129 xi LIST...

Ngày tải lên: 12/09/2015, 08:18

... CXR For example, ultrasonography is more accurate than CXR for detecting pneumothorax However, short training courses must be organized to reach a basic level of competency for every physician ... performing a CT scan if doubt persists, especially if new chest tube insertion is under consideration These excellent performances make pleural ultrasonography more than an alternative to CXR and ... ICU length of stay, and duration of mechanical ventilation was found between the ondemand and daily routine groups, and the meta-analysis highly suggests abandoning routine CXRs However, only two...

Ngày tải lên: 21/06/2014, 05:20

... more than 40 expertly annotated genomes (119 replicons) The ISsaga platform has been designed to maintain common standards for high quality IS annotation used in ISfinder at both protein and nucleotide ... or can be supplied by expert ISfinder annotators on request -GenBank files -Fasta Nucleotide -Fasta Nucleotide and Protein Starting the annotation (a) Pre-annotated file ? Yes No Automatic annotation ... size and e-value 1e-5) analysis, which yields an IS prediction and generates a webbased annotation table If no ORFs are found, BLASTN is performed against the ISfinder database and any candidate...

Ngày tải lên: 09/08/2014, 22:24

Ngày tải lên: 21/02/2014, 05:20

... when other platforms usually enforce the use of a dedicated document format, LinguaStream is able to process any XML document On the other hand, LinguaStream is more targeted to experimentation ... directly “transcribed” and used Involved procedural mechanisms, committed to the platform, can be ignored In this way, given rules are both descriptive (they provide a formal representation for a linguistic ... linguistics and NLP, and allow rich and structured information representation Every component can produce its own markup using preliminary markups and annota- 96 tions Available formalisms make...

Ngày tải lên: 22/02/2014, 02:20

... universities should pay extra attention to the quality assurance Many standards and guidelines for quality assurance in the Higher Education area have been defined within higher education Universities ... enhances access to and provision of high quality learning history-related information, is a very challenging task because it can often involve many educational organizations with various platforms ... Nguyen Thanh Binh et al / VNU Journal of Science, Natural Sciences and Technology 24 (2008) 110-121 Protégé OWL extensively for input and output of OWL ontologies and models, creating and changing...

Ngày tải lên: 05/03/2014, 11:21

... subsequent NMR analysis The NMR resonances of [15N]-amino groups, for example, are at a different chemical shift than the protein amide resonances and therefore not interfere with the protein fingerprint ... routine techniques in high- throughput NMR studies of proteins Acknowledgements GO and KO thank the Australian Research Council (ARC) for a Federation Fellowship, and an Australian Linkage (CSIRO) ... [15N]-labelled proteins makes it an attractive tool for preliminary studies prior to the production of uniformly [15N ⁄ 13C]labelled samples for in-depth NMR analysis Much information can be gleaned already...

Ngày tải lên: 07/03/2014, 12:20

... Toulouse, France B Hamp and H Feldweg 1997 Germanet - a lexicalsemantic net for german In Proceedings of ACL workshop Automatic Information Extraction and Building of Lexical Semantic Resources for NLP ... Piskorski and G Neumann 2000 An intelligent text extraction and navigation system In Proceedings of the RIAO-2000 Paris, April M Siegel, F Xu, and G Neumann 2001 Customizing germanet for the use ... What is thus called for is an integrated, flexible architecture where components can play at their strengths Partial analyses from SNLP can be used to identify relevant candidates for the focussed...

Ngày tải lên: 08/03/2014, 07:20

... the easy readability of generated texts, and therefore could significantly enhance the performance of NLG systems (Scott and Souza, 1990) Most existing natural language generation systems use rhetorical ... semantic variable with an S substitution node in the tree To give an example, Figure illustrates elementary trees for the input below: AP fatal/ legal x NP the substance ii iii p: fatal/legal (x) ... fatal, x] , [x, substance]] Output: the fatal substance is illegal the substance, which is fatal, is illegal the substance is illegal and it is fatal The parenthetical ELABORATION tree is used for...

Ngày tải lên: 23/03/2014, 17:20

... additional marks for hyphenation points (for later use by a formatter performing automatic syllable partition), and several other for foreign and Latin words, geographical terms, etc that many paradigms ... appear as many times as parts of speech it is assigned For example, the word circular can be an adjective (marked as j, meaning 'circular'), a feminine noun (marked as nf, meaning 'note'), and a verb ... arrellanarse DICTIONARY-BASED TEXT COMPOSITION For each word in the text the program is able to produce all its possible base forms and parts of speech (out of context at this first stage) It can...

Ngày tải lên: 24/03/2014, 05:21

... REVIEW ARTICLE Box Rational design of nanocarriers for cancer therapy Nanocarriers can offer many advantages over free drugs They: For rapid and effective clinical translation, the nanocarrier should: ... Radio-immunoconjugate Bexxar Radio-immunoconjugate Daunorubicin Doxorubicin DaunoXome Myocet Liposomes Liposomes Doxorubicin Doxil/Caelyx PEG-liposomes Vincristine Onco TCS Liposomes Paclitaxel Abraxane Albumin-bound ... immunoconjugate linked with doxorubicin and comprising an antibody that targets and binds to the Lewis-Y antigen (expressed on 75% of all breast cancers) — demonstrated significant anti-tumour activity...

Ngày tải lên: 28/05/2014, 15:07

... Meyer, and Marco A Marra 27 Computational Infrastructure and Basic Data Analysis for High- Throughput Sequencing David Sexton 55 Base-Calling for Bioinformaticians Mona A Sheikh and Yaniv ... their high- throughput analysis process by explaining the principles behind existing applications, methods and programs so that they can extract the maximum information from their data 1.4 1.4.1 High- Throughput ... issues and many others dealing with the current and future states of high- throughput data N Rodríguez-Ezpeleta and A.M Aransay analysis, we find Chap 14 an excellent way to conclude this book and...

Ngày tải lên: 29/05/2014, 14:33

... systems with thousands of unknown parameters [3] L (X ∗ ) G (X ∗ ) = X X To interpret gX and X note that for any power law L (X) = mX p the elasticity is X = p Constant functions have an elasticity ... of X ∗ one can use dynamical systems theory and evaluate the Jacobian of (1) at X ∂G ∂L J∗ = − X X =X X X =X Conclusion The simple example already shows that generalized modeling For expressing ... simple parameters This Jacobian can then analyzed analytically or numerically by a random sampling ∂ log G ∂ log L where gX := ∂ log X |X= X ∗ and X := ∂ log X |X= X ∗ are so-called elasticities,...

Ngày tải lên: 18/06/2014, 18:20

... systems with thousands of unknown parameters [3] L (X ∗ ) G (X ∗ ) = X X To interpret gX and X note that for any power law L (X) = mX p the elasticity is X = p Constant functions have an elasticity ... of X ∗ one can use dynamical systems theory and evaluate the Jacobian of (1) at X ∂G ∂L J∗ = − X X =X X X =X Conclusion The simple example already shows that generalized modeling For expressing ... simple parameters This Jacobian can then analyzed analytically or numerically by a random sampling ∂ log G ∂ log L where gX := ∂ log X |X= X ∗ and X := ∂ log X |X= X ∗ are so-called elasticities,...

Ngày tải lên: 20/06/2014, 01:20

... systems with thousands of unknown parameters [3] L (X ∗ ) G (X ∗ ) = X X To interpret gX and X note that for any power law L (X) = mX p the elasticity is X = p Constant functions have an elasticity ... of X ∗ one can use dynamical systems theory and evaluate the Jacobian of (1) at X ∂G ∂L J∗ = − X X =X X X =X Conclusion The simple example already shows that generalized modeling For expressing ... simple parameters This Jacobian can then analyzed analytically or numerically by a random sampling ∂ log G ∂ log L where gX := ∂ log X |X= X ∗ and X := ∂ log X |X= X ∗ are so-called elasticities,...

Ngày tải lên: 20/06/2014, 21:20

... interfaces) and software products (e.g., StepMania for Windows, Mac, Linux; DDR Hottest Party for Nintendo Wii; DanceDanceRevolution for PlayStation 3, DDR Universe for Xbox360, Dance Central and Dance ... angle as an approximation value for the rotation angle around the vertical axis (i.e., yaw angle Ψ) Implicitly, we suppose that the values for qx and qy are small meaning that the rotation axis ... marc.leman@UGent.be Abstract In this article, a computational platform is presented, entitled “Dance-the-Music”, that can be used in a dance educational context to explore and learn the basics of dance...

Ngày tải lên: 21/06/2014, 19:20

... FAOb HGb NLb MSc X X d X X PC PC-O 13 17 4 XX X LPC X Cer CL 10 X LCL 2 XX DAG 13 PE 22 XX PE-O LPE 35 X X PG 10 XX PI 13 XX PS 10 XX SM TAG 25 a X X X XX X X X X X X X X X X X X X MFQL queries ... abundances of lipid species To substantiate this, we validated LipidXplorer cross -platform performance in two steps First, we demonstrated that lipid quantification by LipidXplorer corroborates an ... combination of MasterScan and MFQL enables the interpretation of any MS shotgun dataset acquired on any instrumentation platform and can target any detectable species of any lipid class Second,...

Ngày tải lên: 09/08/2014, 22:23

... ChIP- chip and ChIP- seq data are downloaded and preprocessed There are several integrative software packages designed for ChIP- chip and ChIP- seq analysis, including the widely used CisGenome platform ... platform [3] and the recently published seqMINER platform [4] CisGenome works as a package of command line software for Linux, Windows and Mac OSX and provides a GUI and genome browser only for ... these plans in detail in the following paragraphs Each ChIP- chip/seq platform has its own cistrome data analysis challenges ChIP- chip platforms include tiling arrays from Affymetrix, NimbleGen and...

Ngày tải lên: 09/08/2014, 23:20