network preserving bcu method and its theoretical foundation

... a method that from the amino acid sequence alone identifies a protein with coenzyme binding of the Rossmann type, and predicts the coenzyme specificity The method is applied to all eukaryotic and ... with different coenzyme specificities 1N and 2N indicate and transmembrane segments N-terminally of the coenzyme binding site Similarly, 1C and 2C denote and transmembrane segments C-terminally ... 99.9% and a Matthews correlation coefficient of 0.86 (Table 5) The method, using HMMs trained on all six groups, was applied on 68 genomes: all available among eukaryotes (30) and archaea (18), and...

Ngày tải lên: 23/03/2014, 10:21

... compare proposed numerical method with an approximate solution obtained via different numerical methods as for example homotopy perturbation method, variational iteration method, and so on Discussion ... z−1 is the backward shift operator and ω z−1 is a generating function This generating function and its expansion determine both the form of the approximation and the coefficients In this way, the ... βT γ ω z−1 − z−1 − γ z−1 , 2.13 where β and γ are denoted the gain and phase tuning parameters, respectively, and T is sampling period For example, when β and γ {0, 1/2, 7/8, 1, 3/2}, the generating...

Ngày tải lên: 21/06/2014, 05:20

... of different methods The letters L, H, K, and S stand for the LMC method, the hierarchic clustering method, the K-mean clustering method, and the self-organization map clustering method, respectively ... clusters, and 10 Cluster is divided into clusters and Cluster 10 is further divided into cluster 9, which consists of clusters and 4, and cluster 8, which consists of clusters and We applied the LMC method ... model and result from the hierarchic method is low The K-mean and the self-organized map methods produce worse matches to the clusters in the models than the LMC and the hierarchic clustering methods...

Ngày tải lên: 23/06/2014, 01:20

... the LDFD method to flexibly handle flow problems with complex geometry LDFD-IBM is a delicate combination of LDFD method and Immersed Boundary Method (IBM), and enjoys the merits of both methods ... classified as low order methods (FD,FV,FE) and high order methods (Spectral method and DQ) A brief review of these methods is given below ƒ Finite Difference (FD) method FD method is based on the ... extrapolation) 1.3 Classification of DFD method According to approximation and discretization methods used, the DFD method can be classified into Global DFD method and Local DFD method 1.3.1 Overview of Global...

Ngày tải lên: 09/09/2015, 10:08

... interface method (IIM) (Leveque and Li (1997); Lee and Leveque (2003); Le et al ( 2006); Shirokoff and Nave (2014)), ghost fluid method (GFM) (Fedkiw et al (1999); Liu et al (2000); Liu and Khoo ... (1993) and Saiki and Biringen (1996) have developed a virtual boundary method that uses the feedback forcing in conjunction with the finite difference and spectral method The virtual boundary method ... correction by Wu and Shu (Wu and Shu (2009); Wu and Shu (2010); Wu and Shu (2012), demands very complicated matrix operations along with significant computational memory usage and sequential coding...

Ngày tải lên: 09/09/2015, 11:16

... non-boundary conforming method and the LBM, and then describe the objectives of this research and layout of the thesis 1.2 on-Boundary Conforming Method Up to now, a plethora of prominent methods have been ... kissing and tumbling IBM Immersed boundary method IB-LBM Immersed boundary-lattice Boltzmann method IIM Immersed interface method LBE Lattice Boltzmann equation LBM Lattice Boltzmann method N-S ... Cartesian/cut-cell method has also been extended to simulate the 2D and 3D moving boundary flow problems (Udaykumar et al 2001; Marella et al 2005) and solidification problems (Udaykumar and Mao, 2002; Yang and...

Ngày tải lên: 11/09/2015, 09:59

... discretization methods, such as first-order Euler method (forward and backward), second-order Crank-Nicolson method, second-order Adams-Bashforth method and fourth-order Runge-Kutta method Among ... and finite element (FE) methods Many other methods are developed based on these three methods, which are thus regarded as traditional numerical methods Despite the popularity of traditional methods, ... this novel mesh-free method and the conventional numerical methods is not known to researchers It will be very helpful for our better understanding of this mesh-free method if its relationship to...

Ngày tải lên: 11/09/2015, 10:03

... plates Fujii (1981) and Fujii and Hoshino (1983) applied Bspline functions in the discrete and non-discrete mixed methods for bending and eigenvalue problems of plates Shen and Wang (1987) investigated ... utilizing the same method Simple and unified method which can deal with plate vibrations under general edge conditions have been of academic and practical interest for many decades and very little ... in which E x and E y are Young's moduli; Dx and D y are flexural rigidity constants; µ xy and µ yx are Poisson's ratios of orthotropic material in x- and y-directions, respectively; and G xy is...

Ngày tải lên: 27/11/2015, 11:26

... Controlling UEP Methods for Network- Preserving Transient Stability Models BCU Methods: Methodologies and Theoretical Foundations Chapter 14: Network- Reduction BCU Method and Its Theoretical Foundation ... Numerical Network- Reduction BCU Method Chapter 16: Network- Preserving BCU Method and Its Theoretical Foundation Chapter 17: Numerical Network- Preserving BCU Method Chapter 18: Numerical Studies of BCU ... theoretical foundation for both the network- reduction BCU method and the network- preserving BCU method; • develops numerical implementations of both the network- reduction BCU method and the network- preserving...

Ngày tải lên: 30/05/2014, 23:38

... eubacteria, archaebacteria Candidatus ‘Accumulibacter phosphatis’ Candidatus ‘Accumulibacter phosphatis’ Candidatus ‘Accumulibacter phosphatis’ Candidatus ‘Accumulibacter phosphatis’ Candidatus ‘Accumulibacter ... Comparison of the quantification results of laboratory-scale and full-scale activated sludge by the quantitative PCR method and by the FISH method, and their correlation The results from laboratory-scale ... sludge Candidatus ‘Accumulibacter phosphatis’ in activated sludge samples was quantified using the quantitative PCR and the FISH methods respectively The protocol for the quantitative PCR method...

Ngày tải lên: 05/09/2013, 09:38

... differentia word for dT, and is in its adjacent articles ds, dg, anddlo This means that d7 is a starting point of the new topic "state." Such words are called topic words, and are represented in ... Applications in Knowledge Navigation and Retrieval N Jardine, and R Sibson 1968 The Construction of Hierarchic and Non-Hierarchic Classifications Computer, pages 177-184 I Mani and E Bloedorn 1997 Multi-document ... Mr Youhei Kohno, takes a critical attitude toward China, and asks France to understand Japan's position d6: The prime minister of New Zealand asks the French Government not to restart nuclear testing...

Ngày tải lên: 08/03/2014, 06:20

... proposed method and representative summarization methods which not deal with latent topics As representative summarization methods to compare our method, we took up the Lead method (Brandow et ... a method to estimate a topic distribution, while a variational Bayes method (Blei et al., 2003) and its application (Teh et al., 2006) have been proposed, in this study we use Gibbs sampling method ... application of our proposed method We make a query-biased summary, and show the effectiveness of our method by comparing the accuracy of a generated summary by our method with that of summaries...

Ngày tải lên: 23/03/2014, 16:20

... the main procedures, ~getphrase", extracts some candidates for the slot filler from the left side of a CLAUSE I t fills the slot with these candidates This procedure t a k e s one a r g u m e ... A case slot consists of three elements: one s e m a n t i c f i l l e r condition slot and two syntactic and s e m a n t i c m a r k e r slots H e r e , a p r e p o s i t i o n is d i r e c t ... the slot is filledwith it as a case instance The parser control moves to the next case slot and a candidate phrase for it is extracted from the remainder of the input sentence by invoking the...

Ngày tải lên: 31/03/2014, 17:20

... address length (x + y + z) is partitioned into x bits, y bits, and z bits, where x bits are assigned for root routers, y bits for subrouters, and z bits for ordinary sensor nodes From this assumption, ... impact to the network Its first deployments reported that this new standard could handle thousands of devices in an Asian metering product [2] N-DIMENSIONAL ADDRESSING SCHEME AND ITS ROUTING ALGORITHM ... as network size grows ZigBee Pro, the most recent standard of ZigBee network, standardized a new addressing scheme called stochastic addressing [2] When a new device joins the network, it randomly...

Ngày tải lên: 21/06/2014, 23:20

... through their response specificity and pattern, and were further verified by the electrode location (Materials and methods) MGC-PNs were spontaneously active, randomly generating brief bursts of ... s for s–1 pulse train, s for 0.5 s–1 pulse train) and the averaged correlation between the central peak and the specified peak (Materials and methods) The higher the PFI, the better the PN resolved ... glomerulus from which the recordings had been made Materials and methods Preparation Sensory stimulation and characterization of neurons Manduca sexta (L.) (Lepidoptera: Sphingidae) were reared in...

Ngày tải lên: 06/08/2014, 18:21

... FI network (Figure 1), and apply this network to the study of glioblastoma multiforme (GBM) and other cancer types by expanding a human curated GBM pathway using our FIs, projecting cancer candidate ... from both breast and colorectal cancers, built interaction subnetworks based on the FI network, clustered the subnetworks using edge-betweenness, and compared the resulting network modules to ... other cancer types and revealed common network patterns in cancer related genes and samples, suggesting that there exists a core network in GBM tumorigenesis Materials and methods Importing data...

Ngày tải lên: 09/08/2014, 20:22

... obtained by Johnson and Christy previously (73), and setting ε and ε as 2.25 and 1.77 respectively (i.e = glass, = water), a map of R versus d (thickness of the metal film 1) and the incident angle ... metal surface, and v s is a surface vector ( x, y ) 104 4.2 Excitation and Evidence of Propagating Surface Plasmon v An electron penetrating a solid can transfer its momentum hq and energy ∆Eo ... constant 111 R E2 (a) R 2 (b) E2 (c) 2 (d) Figure A map of R and E versus d (thickness of the metal film 1) and θ o (a and b) spolarization (c and d) p-polarization ε = 2.25 (glass) ε = 1.76 (water)...

Ngày tải lên: 14/09/2015, 14:01

... of R and E versus d (thickness of the metal film 1) and θ o (a and b) spolarization (c and d) p-polarization ε = 1.76 (water) 112 Fig A map of R versus d (thickness of the metal film) and θ ... 100-nm nano-cavity substrate with cavitysurface distance of (a and b) 10 nm, and (c and d) 20 nm (a) and (c) are topology plot, while (b) and (d) are near-field images 172 Chapter Dielectric Nano-cavity ... (b) and 1.96 (c) 113 Fig Otto configuration for exciting surface plasmons (a) p-polarisation; (b) s-polarization xx 2 Fig A map of R and E versus d (thickness of the metal film 1) and θ o (a and...

Ngày tải lên: 14/09/2015, 14:02

... Guangze Zunwang and its religious network connecting Southeast China and the Chinese communities in Singapore and Malaysia as they overlap with the larger forces of migration and socio-political ... linkages between China and the Chinese diaspora By using the cult of Guangze Zunwang and its religious network connecting Southeast China and the Chinese communities in Singapore and Malaysia as a ... religion and Chinese diasporic studies Research Methodology and Sources The fieldworks for this study were conducted in Quanzhou and Xiamen during the summer of 2008, and in Singapore and Malaysia...

Ngày tải lên: 16/10/2015, 15:38

... preparedness and mitigation strategies, and to discuss policies on safety and environment at regional and national levels Moreover, this study is an attempt to develop and to evaluate a practical methodology ... of electricity annually from natural gas, coal, and hydroelectric power [44] To meet soaring power demand from its expanding manufacturing sector and growing population, Vietnam plans to develop ... direction and wind speed over the travel time of radionuclide Based on the result of SWTM, spatial risk map is created The second component (Chapter and Chapter 7) is the revised of SWTM and its application...

Ngày tải lên: 19/10/2016, 20:13