insilico analysis of drought tolerant genes in rice

... many of them are related to nucleotide binding, RNA binding or protein binding Functional analysis of eight temporal categories of gene expression patterns The expression levels at four ZT points ... resulted in sufficiently large number of genes in each temporal category There are several main advantages to performing clustering analysis First, the entire list of diurnal genes may contain genes ... TFBSs in the kb upstream region of genes in each of the eight clusters The color of the cell represents the degree of matching: green cells indicate that there is no matching TF and TFBS, while increasing

Ngày tải lên: 14/08/2014, 08:20

... number of genes in a category The left Y-axis indicates the percentage of a specific category of genes in that main category the levels of four types of amino acids (proline, serine, threonine and ... GABA), but an increase in the levels of another four types of amino acids (lysine, valine, asparagine and aspartic acid) Interestingly, we detected an amount of asparagine in MT but trace in WT We ... glucuronate interconversions Pectate lyase 5, Pectinesterase 3, Pectinesterase Phagosome Tubulin beta-1 chain, Tubulin alpha chain, Tubulin alpha chain, Tubulin beta-4 chain Cysteine and methionine metabolism

Ngày tải lên: 26/05/2020, 23:48

... conserved domains and a more complex gene structure [15,16] In plants, Type II genes are termed MIKC (MADS Intervening Keratin-like C-terminal) genes in reference to the four recognized domains of their ... examine this large gene family in more detail MADS-box genes encode a family of eukaryotic transcription factors distinguished by the presence of a highly-conserved ~58 amino acid DNA-binding ... Background: MADS-box genes encode a family of eukaryotic transcription factors distinguished by the presence of a highly-conserved ~58 amino acid DNA-binding and dimerization domain (the MADS-box)

Ngày tải lên: 26/05/2020, 23:49

... absent in fish except for one intact gene in zebrafish and a few pseudogenes in medaka and stickleback, were not included in the phylogenetic analysis Page of 12 Type only contains group h in this ... history of fishes based on mitochondrial proteins Phylogenetic tree of 11 fishes and one amphibian using Bayesian analysis of amino acid sequences of 12 concatenated protein-coding mitochondrial genes ... genes in different fishes remains unknown, because some of the sequences in the genome database of distinct species may be either intact or not completely included because of the limitation of sequencing

Ngày tải lên: 02/11/2022, 10:45

... sublineola has four predicted LysM-domain SSP genes Two of these are shared with C graminicola, including a homolog of C1H1 There are five predicted C graminicola proteins, and nine in C sublineola, ... Page 13 of 24 predicted LysM-domain SSP genes in C graminicola, one of which is a homolog of ClH1 Both of these are expressed during the early stages of fungal colonization in the WT strain (Additional ... LysM chitin-binding domains [84]; necrosis-inducing NPP domains [85]; NUDIX domains [86, 87]; and Common in Fungal Extracellular Membrane (CFEM) domains [88] Seventeen percent of the C sublineola

Ngày tải lên: 19/11/2022, 11:36

... anthocyanins were mainly delphinidin, cyanidin, petunidin, pelargonidin, peonidin, and malvidin (Fig 8a) Accordingly, the down-regulated expression of genes encoding MBW activator complex components inhibited ... expressed in the normal capitula, including some important transcription factor genes (MYB, GRAS, and BTF3 genes) , ubiquitin-conjugating enzyme genes, zinc finger protein genes, and many unannotated genes ... transcription factor genes were expressed only in the normal capitula, including 36 C2H2 genes, bZIP genes, bHLH genes, MYB genes, HB-other genes, C3H genes, E2F/DP genes, GATA genes, ERF gene, HSF

Ngày tải lên: 30/01/2023, 20:10

... treatment in both cultivars (48.9% in DD and 50.7% in IR20) Drought stress is known to induce accumulation of osmolytes such as proline, glycine betaine that help in the prevention of dehydration in ... also explains a steady rise in ABA levels in DD seedlings under stress compared to a rapid increase in ABA levels in IR20 (Fig. 1d) Considering the magnitude of differentially expressing genes and ... instrumental in the regulation of xanthophyll cycle and maintenance of redox homeostasis in plants52,53 The changes in transcript levels of these genes also indicate towards increase in reduced

Ngày tải lên: 19/11/2022, 11:42

... Amplicon melting analysis of fragment ABD6-1 in 32 blind samplesFigure 5 Amplicon melting analysis of fragment ABD6-1 in 32 blind samples. Amplicon melting analysis of fragment ABD6-1 in 32 blind samples, ... populations contain single- nucleotide changes in the genome. To detect such induced mutations in a PCR reaction end-point containing frag- ments of three homoeoloci in wheat means the software should ... melting analysis of fragment ABD6-1Figure 4 Amplicon melting analysis of fragment ABD6-1. Amplicon melting analysis of fragment ABD6-1 in duplicated non-mutant and mutant samples, showing the

Ngày tải lên: 12/08/2014, 03:21

... sequenced, making comparative analysis of HGT possible within this group. Analysis of HGT in eukaryo- tic parasites offers interesting insights into their evolution. It is also of practical significance: ... establishment of the primary plastid [16,17] in plants. To investigate this, the number of enzymes of chlamydial origin in Ostreococcus was examined (Table 1). Three enzymes of chlamydial origin were ... transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes John W Whitaker, Glenn A McConkey and David R Westhead Address: Institute

Ngày tải lên: 14/08/2014, 21:20

... deubiquitinating factors Correspondingly, the UBA domain binds with polyubiquitin chain of substrate;... genes of the ubiquin-proteasome system were analysed, that encode proteins containing ... ubiquitin receptor of the valosin containing protein (VCP)... (VCP) that interacts with E3 ubiquitin ligase to regulate the ERAD process In case, the UBXN1 encodes a protein containing a ... Contribution of postmortem changes of integrin, desmin and μ-calpain to variation in water holding capacity of pork Meat Science 74: 578-585 66 Enclosure List of abbreviations ATP : Adenosine triphosphate

Ngày tải lên: 19/11/2015, 16:33

... and Breeding Degree: Doctor of Philosophy Date of receiving certificate: June 2015 College of Fisheries Huazhong Agricultural University June 2015 Transcriptome analysis and expression of immune-related ... annotation 41 3.3.4 Analysis of differentially expressed gene profiles 45 3.3.5 Identification of differentially expressed innate immune-related genes 46 3.3.6 Pathway analysis ... Discussion 63 CHAPTER In silico characterization and homology modeling of proteins encoded by immune-related genes in Megalobrama amblycephala 65 5.1 Introduction 65

Ngày tải lên: 21/05/2016, 23:07

... action of glycerol kinase (GK) There are 14 unigenes encoding for GK as annotated in the rice genome database [25] None of the GK genes was affected in their expression in any of the time points in ... single layer of PC and proteins which include oleosins, caleosins and steroleosins, with oleosin being the most abundant [41, 42] Six oleosin genes, caleosin genes and steroleosin gene have been ... regulated in order to incorporate the increased level of oleic acid in TAG that is stored in the form of OBs Further, the observation of a modest increase in TAG in the HO rice grains may also

Ngày tải lên: 22/05/2020, 04:41

... TaGA2ox8 predominate in the flowering spike and TaGA2ox7 in developing grain Analysis of GA gene expression in separate tissue layers of the developing grain revealed that the GA biosynthetic genes, ... critical role in wheat grain development: endogenous GA levels are very high in developing grain and increase during grain expansion [10] and wheat lines containing Rht alleles have smaller grains [15] ... importance of GA signalling in determining plant stature is clear from evidence in both wild and crop species showing phenotypic effects of genetic variation in GA biosynthetic and signalling genes In

Ngày tải lên: 26/05/2020, 21:17

... up-regulates genes that encode components of the ER protein-folding machinery, including BIP3, CRT (Calreticulin), PDI (Protein Disulfide Isomerase) and genes encoding CCACG and CCAAT box binding factors, ... stress in physic nut seedlings In addition, there are ABAindependent drought response pathways in plants, involving genes that include the HD-ZIP family, DREB2 and some NAC TF genes [6] In drought ... Academy of Sciences, Guangzhou 510650, China 2University of Chinese Academy of Sciences, Beijing 100049, China 3Department of Environmental Engineering and Chemistry, Luoyang Institute of Science

Ngày tải lên: 26/05/2020, 23:32

... Brassicaceae and Leguminosae Expression analysis of the tomato Pht1 genes in different tissues under low-P condition In this study, for gaining better understanding of the possible functions of specific ... proportion of AM-induced Pht1 genes present/retain in solanaceous species compared to that in many of other mycorrhizal plants, such as rice, to a certain extent, reflects the importance of these genes ... speciation of solanaceous lineages from a common ancestor Intriguingly, in viewing of the localization of tomato LePT2/6 and potato StPT2/6/7 on their corresponding chromosomes, it is tempting to

Ngày tải lên: 27/05/2020, 00:52

... Encyclopedia of Genes and Genomes (KEGG) databases The protein-protein networks of the identified expression genes were mapped using STRING software to predict protein interactions By integrating these ... performed protein-protein interaction analysis to screen important candidate genes regulated by PLK1 in bladder cancer cells using STRING software (http://string- Page of 11 db.org) In total, 69 ... Protein-protein interaction analysis was used to screen the important candidate genes regulated by PLK1 in bladder cancer cells by using STRING software (http://string-db.org) Analysis of the interaction

Ngày tải lên: 23/07/2020, 03:05

... which is an indication for positive selection Interestingly rs17227231 which is linked with an r2 = 92 to rs17227210 could change the protein binding of GATA3 (GATA binding protein3) as well ... gene in the process of tumorigenesis in BC, it is possible that germline variations and CNV in those genes could influence the risk of BC For this reason, we conducted this case–control study in ... of APOBEC3A gene and exon of APOBEC3B gene resulting in complete removal of the coding region of the APOBEC3B gene This deletion is associated with decreased expression of the APOBEC3B gene in

Ngày tải lên: 21/09/2020, 02:06

... maximum number of genes encoded undefined expressed proteins followed by zinc finger domain containing proteins and cytochromes (Fig 1b) Thus the undefined expressed proteins encoding genes are a ... end point) are to be provided as input by the user This lists the stress responsive genes in the interval in another window Selecting individual genes from this list provides detailed information ... alike in their breeding and fine mapping efforts Our purpose of developing RiceMetaSys is to provide a separate link for each and every economically important biotic and abiotic stress in rice In

Ngày tải lên: 25/11/2020, 17:33

... regulated genes In this biological category expression profiles of important genes involved in stress signaling systems and other stress regulated genes like chaperons (including dehydrins and ... NILs The analysis of the genes found exclusively in the tolerant genotypes is of interest to identify putative genes associated with drought tolerance. The identification of DEGs in the tolerant ... to drought stress in roots of rice, and salt stress [54]. We found that although the induction of genes involved in this category is a common response in roots of rice lines at reproductive...

Ngày tải lên: 11/08/2014, 11:21

... YamaguchiShinozaki K, Urao T, Terao T, Shinozaki K: Novel drought- inducible genes in the highly drought- tolerant cowpea: Cloning of cDNAs and analysis of the expression of the corresponding genes. ... important roles in drought tolerance in cowpea and may be a key factor in determining the level of drought tolerance in different cowpea genotypes. Background Drought is one of the main abiotic factors ... regulated by drought stress and target genes were predicted for five of them. For instance, vun_cand030 was downregulated by drought and putatively targets a zinc finger protein. Zinc finger proteins...

Ngày tải lên: 11/08/2014, 11:21