identification phylogenetic analysis and tests for protein evolution

... K: Identification of amino acids involved in protein structural uniqueness: implication for de novo protein design Protein Eng 2002, 15:555-560 Brunak S, Engelbrecht J: Protein structure and ... detect, visualize and analyze residue co-locations in and between protein structures [14] Eighty different protein structures were taken from the protein structure database [15] and residue co-locations ... of the amino acids A and B and HM(Arg)-HM (Ile) = 10.6 This formula gives the maximal index (20) for identical amino acids (closest hydrophobicity) and the minimal value (1) for the two hydrophobically...

Ngày tải lên: 13/08/2014, 23:20

... permeability of concrete sand, sand-gravel mixture, and uniform fine sand (prepared by WES) 2-22 EM 1110-2-1901 30 Sep 86 b Masch and Denny Method For uniform or nonuniform dense clean sands, classified ... developed by Hazen for uniform loose clean sands The agreement between measured and computed permeability is within one order of magnitude for uniform sands and glass spheres Therefore, Hazen's equation ... for which laminar flow occurs for a fine sand (courtesy of 147 American Society for Testing and Materials ) Hazen's experiments were made on sands for which 0.1 mm < D10 < 0.3 mm and the uniformity...

Ngày tải lên: 28/04/2014, 11:51

... in the construction procedure to be made early in the project (Hallford 1983; Holland and Turner 1980; and Gerwick, Holland, and Komendant 1981) (7) Treatment at Top of Concrete Cutoff Wall As ... Ratios for Dams Founded on Pervious Foundations (a) Table 9-10 Minimum Bligh's Creep Ratio Material Very fine sand or silt 18 Fine to medium sand 15 Coarse sand 12 Fine gravel or sand and gravel ... yield of the well and the amount of sand infiltration Information from the pumping test is used to determine the acceptability of the well and for evaluating any changes in performance or loss...

Ngày tải lên: 28/04/2014, 11:51

... a Gaussian random variable with mean m and variance σ = 2m [14] We call information content (IC), the mutual information between a random variable representing a transmitted bit and another one ... asymptotic analysis of the joint decoding of Raptor codes on the BIAWGN channel The analysis is presented from the fountain point of view for our optimization purposes To perform this asymptotic analysis, ... tandem decoding (TD) is used: it consists in decoding the LT code first and then the precode independently, using the soft extrinsic information on the input symbols as a priori information for...

Ngày tải lên: 21/06/2014, 22:20

... Views used for training and registration 13 representative quasiviews are selected and used for training, and hence for registration The number of used features (especially, the features for subregions) ... to profile, we use holistic features and features for For details for our experiment, see Figures and For one view, one image is selected In the experiment for multiview descriptor optimization ... ) to (0◦ , 40◦ ), training views for the views (0◦ , −50◦ ) and (0◦ , 50◦ ), and training views for the views (0◦ , −60◦ ) and (0◦ , 60◦ ) Figure is obtained before adding neighboring images in...

Ngày tải lên: 22/06/2014, 19:20

... issue will help researchers and practitioners alike by providing focus and clear understanding of the status and challenges in the area of robust analysis and coding for video transmission Beatrice ... video/multimedia compression and transmission, video encoder optimization, robust content-based and object-based video analysis and coding, and visual quality She authored two books and coauthored over ... classification, and a sender-side that embeds the classification side information The fourth and final paper of this section, “A framework for advanced video traces: Evaluating visual quality for video...

Ngày tải lên: 22/06/2014, 23:20

... Temporal error analysis for TSSP1 in 1D: errors at t=5.0 with ∆x = 32 55 4.2 Temporal error analysis for TSSP2 in 1D: errors at t=5.0 with ∆x = 32 55 4.3 Spatial error analysis for TSSP1 in 1D: ... scheme, and (ii) pseudospectral scheme In the former, Edwards and Burnetts [21] introduced a Runge-Kutta method to solve GPE for 1D ground state and 3D ground state with spherical symmetry; Bao and ... 58 4.3 (a) time evolution of photons mass N(C) for different κ; (b) time evolution of mass of ψ for different κ 59 4.4 Time evolution of mass of two condensates...

Ngày tải lên: 28/09/2015, 13:38

... DATA ANALYSIS AND MODELING FOR ENGINEERING AND MEDICAL APPLICATIONS MELISSA ANGELINE SETIAWAN (B.Tech, Bandung Institute of Technology, Bandung, Indonesia) A THESIS SUBMITTED FOR THE DEGREE ... currently underway – the information revolution Information revolution has slowly turned us into an information based society While ‘information’ was always useful for human development, it is ... divided into training set and validation set (or test set) The portion of the division is usually 80% for training set and 20 % for test set (or 75% for training set and 25% for test set) The training...

Ngày tải lên: 04/10/2015, 10:24

... transport - Inland transport andahandling time) - Customsaclearance and inspections - Port andaterminal handling - Alladocumentation import (US$ per container) - Inland transport andahandling Official ... adoptingaand implementing the sameastandards as partner countries, oraas part of a regional integrationaprocess; - Standardization: to develop formatsafor practices and procedures, documentsaand information ... adoptingaand implementing the sameastandards as partner countries, or asapart of a regional integrationaprocess; - Standardization: to developaformats for practices andaprocedures, documents and informationainternationally...

Ngày tải lên: 02/06/2017, 11:34

... 94 C for min, annealing at 60 C for min, extension at 72 C for 30 sec, and one cycle of extension at 72 C for For second round nested-PCR, pmol of each primer, HE1 and HE3 (Genotech, Korea) and ... were made at National Center for Bio-technology Information (NCBI, USA) BLAST network service Nucleotide sequences were aligned and phylogenetic analysis was performed using the Multiple sequence ... the PCR mix described for first round PCR The reaction conditions were as follows; three cycles of denaturation at 94 C for min, annealing at 55 C for min, extension at 72 C for 1.5 min, followed...

Ngày tải lên: 07/08/2014, 18:21

... YY and DQ carried out the microarray analysis and small RNA sequencing, participated in the long npcRNA identification, and draft the manuscript MX and ZH carried out ChIP analysis, NS, CX and ... program, and 7746 and 5754 transcripts were identified to be protein- coding genes and therefore were discarded in further analysis The remaining transcripts were then analyzed by Blastx and Blastn, ... sense and antisense sequences for TalnRNA9 and TalnRNA12 before or 12 hrs after Bgt inoculation in S genotype and R genotype (a) Expression patterns of sense sequences revealed by microarray analysis...

Ngày tải lên: 11/08/2014, 11:21

... procalcitonin, interleukin 6, and C-reactive protein in patients with and without severe sepsis are given as mean and standard error of the mean (SEM), as well as median and 25th and 75th percentiles ... detail, informed written consent was given by both postoperative patients and probands Informed consent of patients with sepsis was waived by the ethics committee, but written informed consent for ... mean and standard error of the mean as well as median and 25th and 75th percentiles (quartiles) The Mann-Whitney test was used for statistical evaluation resulted in a sensitivity of 83.9% and...

Ngày tải lên: 13/08/2014, 21:21

... Figure Platform2concordance and factors affecting it for genes represented on both ATH1 and tiling arrays Platform concordance and factors affecting it for genes represented on both ATH1 and tiling ... are the correlations for gene expression estimates between ATH1 and tiling array platform, and number of candidates for tissue-specific genes (z score > 2.5 across all samples and most abundant ... melanogaster, and humans [16-22] Apart from the discovery of new transcripts, tiling arrays are useful for mapping the 5' and 3' ends of transcripts, and for the identification of introns (for example...

Ngày tải lên: 14/08/2014, 20:22

... UCP 600 Articles 20 and 21 sections (a)(ii) and (iii) "Received for carriage" or "received for shipment" documents are not acceptable under UCP 600 For Road, Rail and Inland Waterway the transport ... to G and headed in turn: General Provisions and Definitions; Form and Notification of Credits; Liabilities and Responsibilities; Documents; Miscellaneous Provisions, Transferable Credit and finally ... which the credit is issued and by other specific features of the credit Each type of credit has advantages and disadvantages for the buyer and for the seller Charges for each type will also vary...

Ngày tải lên: 27/10/2012, 16:40

... the information can be categorized as: strategic information, managerial information and operational information Strategic information is the information needed by top most management for decision ... calculated for each function 40 An expected value is then computed using the following formula where, EV stand for the estimation variable Sopt stand for the optimistic estimate Sm stands for the ... managerial information The information required at this level is used for making short term decisions and plans for the organization Information like sales analysis for the past quarter or yearly...

Ngày tải lên: 27/10/2013, 23:15

... report on ONE STANDARD and ONE STANDARD ONLY Enter the exact number of the standard: (e.g 60601-1-1) Q6 standard is out of date standard is incomplete standard is too academic standard is too superficial ... International Standards transparently to the maximum extent possible in their national and regional standards Any divergence between the IEC Standard and the corresponding national or regional standard ... documents produced have the form of recommendations for international use and are published in the form of standards, technical specifications, technical reports or guides and they are accepted by...

Ngày tải lên: 25/12/2013, 10:50

... deletions of protein termini Mechanisms shaping modular protein evolution Evolutionary events Annotation artefacts Fig Results of the protein clusters analysis: relative percentages of different evolutionary ... autonomously Therefore, we Table Deleted domains and domain versatility Position Fraction as single for alla Fraction as single for deletedb Average NN for allc Average NN for deletedd Total for all domains ... found to form single-domain proteins; b fraction of deleted domains that were found to form singledomain proteins; c average number of neighbours for all domains in the protein clusters ± standard...

Ngày tải lên: 19/02/2014, 07:20

... their functional structure For the rule for S, for instance, we add an element describing what the SUBJECT and PRED are for We could say that the SUBJECT is the t h e m e and the PRED is the theme, ... could be turned into a meaningful sentence containing the word run, for instance We can then start looking for phrase types and for relations between phrase types We can perhaps be reasonably confident ... evidence for specific phrase types is often in the eye of the beholder, and the evidence for subtler relationships can be remarkably intangible Nonetheless, there is some concrete evidence, and it...

Ngày tải lên: 22/02/2014, 10:20

... total random field, one is based on either proportion of eigenvalues as follows: Eφi = λi N ∑λ (9) % i i =1 Afterward this procedure is applied for analysis and identification of the random pressure ... mode and cumulative two modes Conclusion Analysis and identification of the unsteady pressure fields measured on some typical rectangular sections using both the Covariance Proper Transformation ... analyze random pressure field and to find out relation between POD modes and physical phenomena (eg., [3-8]) Bienkiewicz et al 1995 [3] used the POD analysis of mean and fluctuating pressure fields...

Ngày tải lên: 05/03/2014, 14:20

... shock 27 kDa protein 1, Superoxide dismutase 2, Myoglobin, and Vacuolar protein sorting 29 [29]; Heat shock protein 27 kDa and Nucleoside diphosphate kinase A [30]; Heat shock 27 kDa protein 1, ... Tropomyosin alpha chain isoform 32.9 Cofilin (non-muscle) 18.5 Heat shock 70 kDa protein isoform 70.8 Heat shock 60 kDa protein 61 Ribosomal protein P0 34.2 Heat shock protein 27 22.3 Transketolase ... these SELDI-TOF MS based tests could complement and provide a broader reference for emerging diagnostic methods and have potential applications for the detection of relevant proteins having highly...

Ngày tải lên: 05/03/2014, 17:20