data management for high throughput screening

... 10.1186/s13068-017-0720-5 Biotechnology for Biofuels Open Access RESEARCH Development of a genetically programed vanillin‑sensing bacterium for? ?high? ? ?throughput screening of lignin‑degrading enzyme ... Biorefinery, Vanillin-inducible promoter, Microbial biosensor, High- throughput screening Background Plant biomass is a potential renewable raw material for sustainable production of biofuels and value-added ... enzymes is limited due to the lack of an efficient Page of 13 high- throughput screening method that is essential for rapid screening of large numbers of mutants Several reports have described

Ngày tải lên: 24/11/2022, 17:55

... metadata keys SCIENTIFIC DATA | 4:160134 | DOI: 10.1038/sdata.2016.134 www.nature.com/sdata/ Key Datatype Description material_id string Materials Project ID number formula string Chemical formula ... Petousis, I et al High- throughput screening of inorganic compounds for the discovery of novel dielectric and optical materials Sci Data 4:160134 doi: 10.1038/sdata.2016.134 (2017) SCIENTIFIC DATA | 4:160134 ... SCIENTIFIC DATA | 4:160134 | DOI: 10.1038/sdata.2016.134 www.nature.com/sdata/ calculation Our results are integrated in the Materials Project11 which is an open database and aims at employing high- throughput

Ngày tải lên: 04/12/2022, 10:37

... ments in knowledge-based analysis for high- throughput genomie data In Chapter 5 ove present a typical translational study for severe traumatic patients, where high Uhzoughput gesomie technology ... developed high- throughput mRNA sequencing (eoRNA-Seq) is another high thioughput method to ienbfy and quan0fy transeript isoforms [10-11] However, is high processing cost, low sample throughput, ... eliies The high d rensionliy of high- throughput dats often causes false positive traslaions of mole- ular signatures int a clinical domain Conventional methods shrink data dimension in a data- driven

Ngày tải lên: 21/02/2014, 05:20

... VOLUME 190 High Throughput Screening Methods and Protocols Edited by William P Janzen HUMANA PRESS High Throughput Screening Assays 1 Design and Implementation of High Throughput Screening Assays ... Biochemical Target type Assay formats Table The Most Important Assay Formats for Various Target Types Macarrón and Hertzberg High Throughput Screening Assays able performance while keeping assay ... function (4), confocal imaging platforms for rapid cellular and subcellular imaging, and the continued development of reporter-gene technology High Throughput Screening Assays 3.1 Biochemical

Ngày tải lên: 11/04/2014, 09:46

... TECHNIQUES FOR HIGHTHROUGHPUT IDENTIFICATION OF PROTEINS HU YI (B.Sc.) NATIONAL UNIVERSITY OF SINGAPORE 2006 DEVELOPMENT AND APPLICATION OF ADVANCED PROTEOMIC TECHNIQUES FOR HIGHTHROUGHPUT ... from three different aspects for high- throughput identification of enzymes and their associated proteins in yeast proteome (catalomics). Firstly, to validate the high- throughput capacity of differential ... Chapter High- throughput screening of functional proteins from a phage display library 112 5.1 Introduction 112 5.2 Objective 113 5.3 Results and discussion 114 5.3.1 In vitro screening

Ngày tải lên: 16/09/2015, 08:30

... 15:542 A Page of 11 C B D miR-NC1 miR-NC2 miR-9 Fig High- throughput screening identifies microRNAs that control HCC invasiveness a Steps followed for identification of microRNAs with both functional ... Then, triplicate samples of 2×105 cells from each cell line were assayed for colony formation using the CytoSelect Cell Transformation kit (Cell Biolabs, Inc) The number of colonies were counted ... relevance in HCC (Fig 1a) Specifically, we followed a dual experimental approach by performing first a highthroughput microRNA screen in SNU-449 liver cancer cells and secondly, evaluated the expression

Ngày tải lên: 28/09/2020, 10:19

... comparison functionalities on high- throughput TR and BcR sequencing data Adopting alternative clonotype definitions, IRProfiler implements a series of algorithms for 1) data filtering, 2) calculation ... software pipeline for immune repertoire profiling of high- throughput TR and BcR sequencing data, called Immunogenetic Repertoire Profiler or IRProfiler IRProfiler covers two of the aforementioned ... Maramis et al BMC Bioinformatics (2018) 19:144 https://doi.org/10.1186/s12859-018-2144-z SOFTWARE Open Access IRProfiler – a software toolbox for high throughput immune receptor profiling

Ngày tải lên: 25/11/2020, 15:39

... numbers Creating a data file Starting (SL'DWD using (SL'DWD to examine a dataset Making a data entry form Creating a data (.REC) file Entering and editing data Searching for data 'DWD4XDOLW\DQG'DWD&KHFNLQJ ... to produce data of the highest possible quality in a form suitable for statistical analysis The stages of data processing that we shall consider in this course are: q Planning the data needs ... and the details of data management activities are the same whatever the field of study We have chosen (SL'DWD for this book for five reasons: It has been specifically written for use in research

Ngày tải lên: 08/09/2021, 11:34

... of data science in high school teaching and learning, discussing efforts to integrate data science into instruction, where data science “fits”, why efforts succeed or fail, and how to define data ... Unstructured Data Science Education Drivers for the Big Data Hubs’ Open Storage Network Multi-domain Data Distributed Active Archive Center (MD DAAC) for data science education: allows data to be ... https://www.clouddatascience.org/ National Center for Women in Information Technology: https://www.ncwit.org/ West Big Data Hub high school census data competition: https://www.letsmakeitcount.org/ WiDS Datathon

Ngày tải lên: 23/10/2022, 08:26

... university data archive and management, RDM in the humanities, RDM for human subjects, data for re-use, a data manager for an interdisciplinary project, and the PI on the same multi-university data ... development of a DMP for an ongoing research project Student work for the course is outlined in Table ? ?Data Management for Researchers: Organize, maintain and share your data for research success” ... contains a mixture of practical information (e.g., improving data analysis and documentation) together with high level topics (e.g., planning for data management and data lifecycles) The course topics

Ngày tải lên: 30/10/2022, 21:13

... sufficient accuracy All platforms can use this format, precluding the need to translate when communicating data Buffer The buffer stores each AABB’s data in an efficient manner for processing by the ... offer excellent throughput for collision detection, it would be less desirable for ray tracing, as k-d trees cannot be easily refitted for dynamic scenarios To reconcile the throughput of BVHs ... specialisation for specific scenarios In contrast, there are certain object-count ranges for which the CPU and GPU perform poorly Higher object counts significantly degrade CPU throughput The

Ngày tải lên: 08/11/2022, 14:56

... effects requires high- throughput cellular analysis methods that are not currently available These examples highlight instances in which measures of bulk cell response are uninformative with respect ... cell imaging analysis on a platform that is amenable to automation and high throughput applications and will be readily usable by cell biologists This approach, therefore, overcomes several limitations ... procedure does not affect analysis of cell function), and 2) enables a high throughput approach to cellular analysis such that functional data is obtained on sufficient numbers of rare cell types In addition,

Ngày tải lên: 19/11/2022, 11:42

... model of hAdoMetDC that is compatible with general protocols for high- throughput drug screening, and used this model in in silico screening of hAdoMetDC inhibitors against a large compound library ... adapted for experimental high- throughput screening of hAdoMetDC inhibitors Finally, we obtained an hAdoMetDC inhibitor lead with a novel scaffold This study provides both new tools and a new lead for ... CADD is in silico high- throughput (HTP) drug screening based on protein 3D structures, which, to be really fruitful, is generally followed up by complementary experimental HTP screening procedures26–28

Ngày tải lên: 24/11/2022, 17:50

... Bonferroni test for outlier identification were conducted Data were transformed in order to achieve normally distributed data and homogeneity of within-dose variance If the raw or transformed data passed ... findings clearly demonstrate that the MicroFlow® and Metafer™ MN scoring platforms are powerful tools for automated high- throughput MN scoring and dose response analysis Keywords  Micronucleus · ... 10.1007/s00204-016-1903-8 PROTOCOLS Evaluation of the automated MicroFlow® and Metafer™ platforms for? ?high? ? ?throughput micronucleus scoring and dose response analysis in human lymphoblastoid TK6 cells

Ngày tải lên: 24/11/2022, 17:56

... and cross-reactivity against other subtype was 0% (0/6) for both platforms Conclusion MAGPIX and DPP platforms can be utilized for high- throughput and in- field detection of novel influenza virus ... multiplex platforms for antibody detection The multiplexed magnetic fluorescence microsphere immunoassay (MAGPIX) is a high throughput laboratory-based assay Chembio Dual Path Platform (DPP) is ... Article type : Original Article Novel multiplex assay platforms to detect influenza A hemagglutinin subtype specific antibody responses for high- throughput and in-field applications Zhu-Nan Li1*, Jessica

Ngày tải lên: 04/12/2022, 16:01

... ENDOTHELIAL PERMEABILITY PATHWAY AND HIGH- THROUGHPUT DATA ANALYSIS FOR DISEASE BIOMARKER SELECTION     WEI XIAONA (M.Sc., Nankai University) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY ... dataset collected from GEO Database Unsupervised hierarchical clustering analysis provides additional indication of the predictive ability of selected signatures Then the other type of high- throughput ... groups by hierarchical clustering BMC Bioinformatics, 2004 5: p 114 243 Hu, J., et al., Integrative missing value estimation for microarray data BMC Bioinformatics, 2006 7: p 449 244 Troyanskaya,

Ngày tải lên: 09/09/2015, 10:14

... Infrastructure Solutions for High- Performance Data Networks A Planning Guide for Network Managers www.adc.com/ip Welcome to The Planning Guide for Network Managers Your data center is a critical ... to optimize their data centers, improve network reliability and contain costs Worksheet: Analyzing Your Data Center Design and Layout The key to maintaining a high- performance data network is the ... within your data center? g g g g 100%; our data center is completely full of equipment and there is no room for any more 75 to 99%; our data center is heavily utilized, but we have room for some

Ngày tải lên: 27/10/2013, 17:15

... Solutions for High- Performance Data Networks A Planning Guide for Network Managers Infrastructure Solutions for High- Performance Data Networks A Planning Guide for Network Managers Your data center ... strategies for improving reliability and cost effectiveness in terms of layout, cable management, cooling and power utilization • Pursue forward-thinking strategies for the 21st century data center ... Layout The key to maintaining a high- performance data network is the design and layout of your data center In Section A, we’ll examine your current or planned data center The worksheet will help

Ngày tải lên: 21/12/2013, 07:17

... data management group for data management tasks, and applications written for the production of data products Data management tasks could include instrument data acquisition and processing, data ... well as potential data users in the formulation of a data policy A clear statement of the importance of the data collection effort and of the flow of the data and information before, during, and ... day operation of data collection and data management systems including: backups; access and security; data entry, transfer, transformation; and data control These routine data management protocols

Ngày tải lên: 07/03/2014, 02:20

... Did This Study Highlights Accountability Integrity Reliability March 11, 2008 MINERAL REVENUES Data Management Problems and Reliance on Self- Reported Data for Compliance Efforts Put MMS Royalty ... and performance data by (1) reviewing the systems that MMS has in place to help ensure that the data were entered and calculated correctly, and (2) comparing the data to aggregate performance ... production data filed by payors (those responsible for paying the royalties) with production data filed by operators (those responsible for reporting production volumes). • MMS’s compliance efforts

Ngày tải lên: 08/03/2014, 14:20