cross species comparison of gene expression data

... 400,000 reads of parallel sequencing 100mb of output per run Run time 7.5 hours *Unless otherwise stated, read and output data are provided on the 454 FLX 20 sequencer Step 1: Preparation of the DNA ... PYROSEQUENCING Step 4: Data analysis • The intensity of the light emitted by luciferase is proportional to the number of nucleotides incorporated • Therefore, if the intensity of a single read is ... intensity of a single read is times the intensity of a previous read, there are times the amount of incorporated nucleotides in the second read Two Types of Analysis • Run Time Analysis: • Image acquisition...

Ngày tải lên: 19/03/2014, 22:32

... thus generally greater than the increase in explanation of variance by the characteristics of the disease The relevance of this block of variables is mainly due to the doctor facilitation scale of ... relatively large number of missing values can be anticipated for data on income (cf [59]; in our dataset, the percentage of missing values was 24.8%) and a selective loss of data can be expected ... beginning of rehabilitation, variables of the physician-patient relationship at the end of rehabilitation For all HRQOL scales, higher values indicate higher quality of life Effect size = difference of...

Ngày tải lên: 20/06/2014, 16:20

... models Results There were a total of 5,887 participants in the Lung Health Study, of whom 721 died by the end of the follow-up period of up to 15 years The major causes of death at follow-up were lung ... 14.5 years of follow-up from baseline[18] The time metric used was time from the year examination to the time of death or the end of the study or from the year examination to the end of the study ... predictors of mortality in the Lung Health Study Authors David M Mannino,1, 2; Enrique Diaz-Guzman, Sonia Buist, 3 University of Kentucky, College of Public Health, Lexington, KY, USA University of Kentucky...

Ngày tải lên: 12/08/2014, 14:20

... List of Figures xix 3.4 Basic topology of PLL 91 3.5 Block diagram of three phase phase-locked loop system 93 3.6 Block diagram of the current controller of three ... circuit 39 2.2 Phasor diagram of the unbalanced three-phase variables 40 xvii List of Figures 2.3 Equivalent circuit and phasor diagram of AC component of the current and voltage on the ... use of bulky filters However, the bulky filters would not only slow down the dynamic response of the PWM rectifier but also increase the size of the converter The alternative is to make use of active...

Ngày tải lên: 11/09/2015, 16:02

... motor speed 87 4.2 Main steps of genetic algorithms technique 89 4.3 Example of one individual of design variable 91 4.4 Schematic samples of crossover and mutation process ... support and encouragement Contents Summary i Acknowledgments iv List of Symbols xiii List of Acronyms xvii List of Figures xix List of Tables xxvi Introduction 1.1 Permanent Magnet Motors ... Characteristics of PM Materials 1.4 Structure of PMSMs vi vii 1.5 Constant Power Operation of PMSM Drives 10 1.5.2 The Design of PMSMs ...

Ngày tải lên: 15/09/2015, 22:06

... Figure 4: Expression of Der p 1-2 45 Figure 5: Expression of Der p 7-5 46 Figure 6: Inhibition of human IgE binding to allergens by hybrid proteins .48 Figure 7: Comparison of the ... 50% of allergic patients being sensitized to them (Chew et al., 1999; Angus et al., 2004; Weghofer et al., 2005) Different species of mites thrive in different parts of the world as a result of ... the enhancement of immunogenicity and the induction of a slightly different IgG repertoire remain to be elucidated, the data clearly supported the use of hybrids over other types of allergy vaccines...

Ngày tải lên: 07/10/2015, 10:02

... lexical readings of words in the sentence L := the set of defined dependency labels E := A × W × W × L = the base set of dependency edges D := A × W = the set of domains da,w of all constraint ... words of raw text drawn from the taz corpus of German newspaper text When used to predict the probability of the possible regents of each preposition in each sentence, it achieved an accuracy of ... analyses of a sentence from our test set (negra-s18959): ‘Hier kletterte die Marke von 420 auf 570 Mark.’ (Here the figure rose from 420 to 570 DM) A := the set of levels of analysis W:= the set of...

Ngày tải lên: 31/03/2014, 01:20

... public issue of bonds, or a private placement of loans or bonds Sometimes warrants are issued as part of an offering of common stock The proportion of warrants issued with the new offering will ... full $1.28 per share, a drop of 21.5 percent, which is the highest impact of the three choices analyzed Common stock, in terms of this comparison, is the costliest form of capital—if only because ... The effect of immediate dilution of earnings is only part of the consideration There will be the second-stage effect of continuing dilution, because in contrast to the other two types of capital,...

Ngày tải lên: 01/07/2014, 22:20

... Software Threats Software Problems: • In multitasking environment, software conflicts may occur due to sharing of data by all running programs at the same time • Th There may b damage of i f be d f ... involved in the modeling and use of virus causes damage due to: • Lack of control • Difficulty in distinguishing the nature of attack • Draining of resources • Presence of bugs • Compatibility problems ... For example, W32/Simile consisted of over 14000 lines of assembly code, 90% of it is part of the metamorphic engine Cavity Virus Cavity Virus overwrites a part of the host file that is filled with...

Ngày tải lên: 31/07/2014, 04:20

... example is the custom of quoting prices in percentage of par value, this time stated in terms of fractions of a percent in 32ds of a point Thus, a quote of 141:07 means a price of 1,410 7/32 percent ... 436 Cost of equity, 306, 436 Cost of goods, 436 Cost of goods sold, 164, 166, 179 Cost of incremental funds, 326–327 Cost of long-term debt, 304–305 Cost of operating funds, 300–304 Cost of preferred ... payments, 177 Profit, 33–34, 194, 444 Profit and loss statement, 40, 42 Profit centers, 178, 444 Profit contribution, 181 Profit determination, 52 Profit margin analysis, 103–105 Profitability,...

Ngày tải lên: 05/08/2014, 13:20

... obtained In addition, the sensitivity of these species is in the same general order of magnitude as other earthworm species In most cases the differences between species are, depending on the chemical ... Objectives The determination of the survival and the reproductive success of collembolans as representatives of soil mesofauna provides information 18 Assessment of Ecotoxicity of Contaminated Soil Using ... determination of the emergence and growth of different plant species allows assessment of the quality of a certain soil as a habitat for terrestrial primary producers (i.e., in terms of nutrient...

Ngày tải lên: 08/08/2014, 01:20

... about 60 percent of its products included in the list of the Common Effective Preferential Tariff scheme of the Association of Southeast Asian Nations (ASEAN) Free Trade Area Rounds of discussions ... 2003a) Table 10.4 shows the structure of production Industry contributes 46.7 percent to the overall gross value of output of the economy Of the total contribution of industry, 23 percent comes from ... response, the local cost of production goes down by 4.5 percent because of cheaper imports As local demand of domestically produced goods falls because of falling prices of imports, the real exchange...

Ngày tải lên: 08/08/2014, 10:23

... positive LR of 2.01 for the severity outcome (data not shown) Similarly, after deletion of anti-Sa results and restriction to titers of anti-CCP higher than 60 U/ml, the predictive value of anti-CCP ... the influence of aggressive treatment on EPA prognosis An earlier time of introduction, a higher intensity of use, and a more prolonged maintenance of DMARDs, with the objective of controlling ... predictive value of potential prognostic markers Finally, our data stress the importance of intrinsic aggressiveness of arthritis in causing progressive joint damage At inclusion, 18% of the patients...

Ngày tải lên: 09/08/2014, 06:22

... recombination A plot of the variation in intensity of luminescence with temperature is called a glow curve A block diagram of a TL instrument, which is composed of a light-proof box with a heating ... automatically through a range of values, in the course of the experiment DMA is a sensitive method to measure Tg of polymers Side-chain or main-chain motion in specific regions of the polymer and local ... From the variation in the temperature of the tan δ peak of a DMA curve as a function of frequency a transition map can be compiled (Figure 6.13) If the locus of the transition map is a straight...

Ngày tải lên: 10/08/2014, 12:21

Ngày tải lên: 11/08/2014, 09:21

... profiles across the direction of travel of a slant-leg subsoiler, and below wheel tracks (O’Sullivan et al., 1987) In both of these diagrams, the arrangement of the loose and compacted regions of soil ... Variation of cone resistance with depth: (a) across a field of conventionally grown winter barley Large penetration resistances lie below the wheel tracks; (b) across the direction of travel of a slant ... range of soils When the cone angle exceeds 90Њ Ϫ f, where f is the angle of internal friction of the soil, a cone of soil builds up on the probe tip (Koolen and Kuipers, 1983) This body of soil...

Ngày tải lên: 11/08/2014, 15:20

... interpretation of data CGM participated in the design of the study, carried out DNA testing and participated in the writing of the manuscript RJ and SB participated in the acquisition of the data and ... considering a difference of 10% in hospital mortality between groups as relevant, the frequency of the alleles in the population (control group), and a β error of 20% and an α error of 5% An interim ... hospital (23.2%), whereas in-hospital mortality of the 69 excluded patients was 21.7% (P > 0.05) The demographic data and the distribution of genotypes of the 224 patients and 101 control individuals...

Ngày tải lên: 13/08/2014, 01:20

... should designate a Safety Of cer In general, there are two types of test safety of cers: SITE Test Of cer and Range Safety Of cer (RSO) • The Test Safety Of cer is a member of the System Developer’s ... to see if some data may be derived implicitly from other data Decide: How critical the data is needed If there are alternative data collection mechanism or methods Whether the data “value” to ... typically several years after the completion of a contract Challenge 4: Test Data Authentication When formal test data are recorded, the validity of the data should be authenticated, depending on...

Ngày tải lên: 13/08/2014, 08:21

... Integratedchromosome nonredundant gene models gene modelschromosomeanalysis BGI 10 intergenic TARs Japonica 10 10 of cloned gene hereComparison of of 10 TIGR japonica chromosome analysis of cloned intergenic ... contribute to the lower gene model density in the heterochromatin (Figure 7a-c); however, the generally lower detection rate of gene expression indicates that expression of many non-TE models is ... http://genomebiology.com/2005/6/6/R52 file contains a comparison of BGI and TIGR japonica chromosome 10 gene models Additional data file contains a comparison of BGI indica and japonica chromosome 10 gene models Tablemodels...

Ngày tải lên: 14/08/2014, 14:21