comparative analysis of homologous vertebrate genes

... representing the 20.7% of the NBS-encoding genes) have more genes and the rest chromosomes have fewer genes (e g C05 in B oleracea), and many of these genes reside in a cluster manner R genes existing ... thaliana Comparative phylogenetic relationship of NBS-encoding genes in B oleracea, A thaliana and B rapa represents two major groups of TNL (348 genes) and CNL (138 genes) containing genes from ... only TIR domain (TIR-X type genes) Although, the number of NBS-encoding genes in B oleracea is less than that of A thaliana and B rapa but genes with truncated domains of NBS, TIR-NBS and TIR-X

Ngày tải lên: 02/11/2022, 10:49

... SSM-associated genes of C graminicola and C higginsianum [69] Using this approach, combined with manual annotation, 31 PKS genes, eight NRPS genes, six PKS-NRPS hybrid genes, 14 TS genes, and eight DMAT genes, ... Conservation of gene clusters Gene clusters in C sublineola were identified by manual analysis of the genes located on either side of the “backbone” SSM-associated genes (ie the genes encoding ... Multiple rounds of mutation and selection of R and Avr genes during a co-evolutionary “arms-race” leads to the presence of multiple pathogenic races expressing different combinations of Avr genes within

Ngày tải lên: 19/11/2022, 11:36

... dataset consisting of a total of 168 sequences and the prM and partial E gene (705 nt) dataset of a total of 195 sequences were used for phylogenetic analysis A complete list of the sequences along ... and non-structural genes, and the sites of these substitutions could serve as signature sites for genotype identification Phylogenetic analysis of DENV-3 The phylogenetic trees of DENV-3 were constructed ... nucleotide and amino acid sequence among various regions of full-length sequences of different genotypes of DENV-3 With the lack of full-length sequences of viruses belonging to old American genotype IV,

Ngày tải lên: 20/06/2014, 01:20

... Table 1). Predicted Disorder Patterns of EIAV Are Closer to Those of Influenza than of disorder patterns of HIV/SIV Analysis of Figure 2 reveals that the pattern of the pre- dicted disorder in EIAV ... behavior of the matrix proteins [3]. Conclusion Matrix Disorder of Retroviruses Varies with Nature of the Virus A peculiar finding of this paper is the pattern of predicted disorder of EIAV p15 ... of the influenza virus is extremely high causing well- known difficulties in the development of new vaccines. Apparently, the PID rate is a good predictor of the ease of vaccine development of

Ngày tải lên: 20/06/2014, 01:20

... Keshava, ? ?Comparative analysis of hyperspectral adaptive matched filter detectors,” in Algorithms for Multispectral, Hyperspectral, and Ultraspectral Imagery VI, vol 4049 of Proceedings of SPIE, ... implementation [12] The nonlinear versions of a number of signal processing techniques such as principal component analysis (PCA) [13], Fisher discriminant analysis [14], clustering in feature space ... matrix consisting of the M1 eigenvectors of the kernel matrix K(Y, Y) normalized by the square root of their corresponding eigenvalues Now, − the term φ(x)T Cφ Uφ in the numerator of (48) becomes

Ngày tải lên: 22/06/2014, 23:20

... methylation and silencing of tumor suppressor genes, and the inappropriate loss of DNA methylation of oncogenes, have been recognized in recent years as key factors in the development of cancer [1] DNA ... the genes without We obtained a list of 75 imprinted genes from the literature [37,38] that we expect to show allele-specific expression (see Additional file for a list of imprinted genes) Of ... compared the changes of methylation levels between pairs of cell lines at binding sites with the changes of the expression levels of their associated genes The coordinates of TFBSs were downloaded

Ngày tải lên: 09/08/2014, 23:20

... on array handling. As a result of the availability of these reagents and the success of the approach, a large number of such projects have been undertaken, some of them quite large in scope. ... increase in coverage per amount of data was substantially larger: 86% of CCDS genotyped with one lane of data and 94% of CCDS genotyped with four lanes of data While the Agilent kit provides ... most of our sequence data were retained following each filtering step, we conclude that most of our exome capture data were of good quality to begin with. A full bioinformatics report of the

Ngày tải lên: 09/08/2014, 23:20

... Page 1 of 15 (page number not for citation purposes) Implementation Science Open Access Research article What can management theories offer evidence-based practice? A comparative analysis of measurement ... although none of the tools covered all of the attributes. Three RA/RU tools covered the attribute of 'involving the individual', with one of the RU tools also including the attribute of 'valuing ... framework consists of seven categories relating to three core organisational attributes of vision, leadership, and a learning culture, and four stages of knowledge need, acquisition of new knowledge,

Ngày tải lên: 11/08/2014, 05:21

... Shinozaki K: Novel drought- inducible genes in the highly drought-tolerant cowpea: Cloning of cDNAs and analysis of the expression of the corresponding genes. Plant Cell Physiol 1996, 37:1073-1082. ... target genes for 32 out of 44 drought- associated miRNAs. The predicted target mRNAs encode proteins of diverse function, most of them being transcription factors (Additional file 4). F or most of ... of some miRNAs may be very different even between two genotypes of the same species. Furthe r characteriza- tion of the targets of drought-associated miRNAs will help understand the details of

Ngày tải lên: 11/08/2014, 11:21

... indicates the median of three qRT-PCR replicates, orange bar indicates the results of the median of three replications of microarray experiments (B) Correlation analysis of the ratio of differentially ... enrichment analysis of genes specifically expressed in tolerant NILs of rice in response to water stress treatments in root tissue This figure shows a colourful model of parametric analysis of gene ... about 55% of genes differentially expressed in roots of rice in response to drought stress treatments The number of differentially expressed genes (DEGs) increased in NILs as the level of water

Ngày tải lên: 11/08/2014, 11:21

... Conclusions: The comparative studies of EST-SSR markers among all plant lineages is well suited for plant evolution studies as well as for future studies of transferability of molecular markers. ... genetic diversity analysis [9]. On model organisms, microsatellites have been reported to correspond to 0.85% of Arabidopsis thaliana (L.) Heynh, 0.37% of maize (Zea mays L.), 3.21% of tiger puffer ... described the levels of occurrence of microsatellites associated to transcribed regions [7,8,10,11,17-22]. However, some comparative and/or descriptive approaches, still can offer new pers pectives

Ngày tải lên: 11/08/2014, 11:21

... rate (FDR) cutoff of p ≤ 0.05 The numbers of transcripts... a comparative overview of genotype-specific expression patterns of more than 830 unigenes in root tissues of chickpea ... annotation statistics of UG-TDS: the tota l number of unigenes annotated as a known protein with an E-value threshold of e-06, total number of unigens not mapped, total number of unigenes mapped but ... additional file 5). Analysis of sequence similarity of chickpea UG-TDS with other legume species revealed that 2614 (85%) unigenes had significant similar- ity to ESTs of at least one of the analyzed

Ngày tải lên: 11/08/2014, 11:22

... Page 1 of 15 (page number not for citation purposes) Implementation Science Open Access Research article What can management theories offer evidence-based practice? A comparative analysis of measurement ... although none of the tools covered all of the attributes. Three RA/RU tools covered the attribute of 'involving the individual', with one of the RU tools also including the attribute of 'valuing ... framework consists of seven categories relating to three core organisational attributes of vision, leadership, and a learning culture, and four stages of knowledge need, acquisition of new knowledge,

Ngày tải lên: 11/08/2014, 16:20

... Conclusions: This work demonstrates the potential of using comparative tiling sequencing for genome analysis of crop species Based on a comparative analysis of the B rapa sequences and the Arabidopsis ... composition of Br and At genes is very similar The average length of Br genes (ATG to stop codon) is 73% that of At genes This is consistent with previous reports on Table Summary of B rapa chromosome ... accessed online at [73] Ks analysis of homologous sequences The timing of duplication events and the divergence of homologous segments was estimated by calculating the number of synonymous substitutions...

Ngày tải lên: 09/08/2014, 20:20

... output of IFA project A number of framing and cross-cutting questions have been formulated in a course of IFA activities and they are discussed in the next section of this Report Comparative analysis ... resources”(ISDR 2004) In many parts of Asia a declaration of state of emergency signifies a state’s recognition of a disastrous event and often is based on loss of property and investments IFA indicates ... 3.2 Role of institutions in floods risk reduction in Asia This section of Report focuses on results of analysis of institutional perspective in flood risk reduction in the countries of Asia It...

Ngày tải lên: 22/10/2013, 10:15

... unquestioning loyalty (Hofstede, 1991, p.260) Although the contrast of cultural I-C has been used to explain and organize a wide variety of behaviors in a number of different cultures, the use of cultural ... Associate Professor at City University of Hong Kong She teaches business and organizational/management communication Her research interests focus primarily on the comparative analysis of organizational ... following, the construct of turn-taking behaviors is reviewed Turn-taking is the ordering of moves that involve any organized interplay of speech acts A turn consists of all the speech interactant’s...

Ngày tải lên: 09/12/2013, 16:15

... formal ones Modality Modality often appears in both two kinds of letters with a great deal of number The use of active and passive voice Our analysis of two kinds of letter shows that: the passive ... Design of the study Part A INTRODUCTION Rationale of for choosing the subject Aims of the study Methods of the study Scope of the study Design of the study Part B DEVELOPMENT Chapter I: The theoretical ... (Adverbs of enhancement) kind of excessively somewhat sort of rather pretty moderately (Adverbs of moderation) pretty much essentially for the most part virtually crazy largely insance -231.4 Use of...

Ngày tải lên: 18/12/2013, 19:50

... then provide a brief overview of the institutional profiles of the selected financial institutions In a next step, the results of the comparative analysis in the areas of governance, savings products ... ABBREVIATIONS iii LIST OF TABLES iii INTRODUCTION 1.1 The problem 1.2 Working hypotheses and analytical framework 2 INSTITUTIONAL PROFILES OF CASE STUDIES COMPARATIVE ANALYSIS OF CASE STUDIES 3.1 ... transforming small deposits into larger loans Comparative Analysis of Savings Mobilization Strategies CGAP Working Group on Savings Mobilization COMPARATIVE ANALYSIS OF CASE STUDIES 3.1 Institutional type,...

Ngày tải lên: 16/02/2014, 12:20

... with different types of cost structures Therefore, an understanding of the previous development of wastewater treatment plants and of the related construction cost structures of those facilities ... measurement of vagueness (Bardossy, 1990; Moskowitz and Kim, 1993) and the algorithms of Group Method of Data Handling (GMDH) (Hayashi and Tanaka, 1990), the use of a two-stage construction of a linear ... following case study is prepared for a comparative analysis of these three methods representing various types of uncertainties involved in the cost estimation of constructing wastewater treatment...

Ngày tải lên: 15/03/2014, 23:17

... context, the level of financing, the sources and mechanisms of financing of healthcare and HIV/AIDS expenditures This is followed by a comparative analysis of the financial dimension of HIV/AIDS programs ... Classification of HIV/AIDS Expenditures Sources of Financing 37 Financing Mechanisms 38 Zimbabwe 41 Level of Expenditure 41 Sources of Financing 42 Financing Mechanisms 42 37 Comparative Analysis 43 ... detailed assessment of the experiences of, for example, Zimbabwe (with the earmarking of three per cent wage tax for HIV/AIDS expenditures), Lesotho (with the allocation of two per cent of all sectoral...

Ngày tải lên: 22/03/2014, 18:20