a tool for identifying potential oxygen regulated genes

... binding site databases The goals and features of the NFI-Regulome database appear unique among TF binding site databases There are a number of databases that are significantly larger than the NFI-Regulome ... large scale studies have been performed to date for NFI transcription factors Such data will be used when available Utility and Discussion Searching the database and displaying information: Basic ... NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors Journal of Clinical Bioinformatics 2011 1:4 Submit your next manuscript...

Ngày tải lên: 10/08/2014, 09:22

... gene-specific variance Disadvantage: • The permutation based false discovery rate may not be accurate if there are many regulated genes and the sample size is small • It is not as powerful as the transformed ... SAM, and SAM using untransformed intensities for the yeast data, which also suggests that SAM using raw data and t-test are more similar than LPE Summary of results We compared t-test, LPE, SAM ... low variances because of the fudge factor • The permutation based false discovery rate may not be accurate if there are many regulated genes and the sample size is small since the permuted dataset...

Ngày tải lên: 14/08/2014, 14:21

... the pathway interaction database Nucleic Acids Research 2009, 37: D674-D679 18 Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, Daverman R, Diemer K, Muruganujan A, Narechania A: PANTHER: a ... biological roles For pathway analysis, we investigated associated terms in KEGG pathways [16], NCI-Nature pathway interaction database [17], and PANTHER (protein analysis through evolutionary relationships) ... Weka [15], a popular machine learning library written in Java, and the default setting was used for each classification algorithm Table shows the maximum AUC value achieved by each combination...

Ngày tải lên: 10/08/2014, 09:22

... studied by Pandey et al [39] (Table 2): three gamma-proteobacteria (E coli as an AT-rich generic model, Coxiella burnetii as an obligate host-associated organism and Pseudomonas aeruginosa as a free ... calculate a global confidence score for each ORF These are then ranked accordingly and displayed to the user in a tabular format, which ensures clear visualization of the results and allows easy ... given bacterial genome: Rapid Automated Scan for Toxins and Antitoxins in Bacteria (RASTA-Bacteria) This method is based on the genomic features associated with toxins and antitoxins and the existence...

Ngày tải lên: 14/08/2014, 08:20

... samples was created by a laboratory panel (n ¼ 9; females, males, aged 25 –41 years) trained to evaluate attributes selected in advance The attributes were evaluated on a 9-point scale that was ... Preliminary data analysis revealed no significant main effects and only one significant interaction of day and aroma on the pleasantness ratings of the young, implicating an increase in pleasantness ... bitter and more intense in currant flavor and in overall flavor, and stronger in after-taste than the sample with a regular aroma concentration The heightened aroma concentration caused a slight...

Ngày tải lên: 03/04/2013, 21:06

... SigmaStat, a program available from Systat Software Inc RESULTS Identification of predominant fecal sources in surface water In a multiyear study of a small watershed used as a supplemental potable ... sewage or animal feces Table Average bacterial ratios in surface water runoff sorted by land-use associated fecal sources Site Classification Average AC/TC Ratio (n) 102.6 (75) Average FC/FS Ratio ... (39) As is readily apparent, AC/TC and FC/FS ratios in fresh manure both start at values

Ngày tải lên: 05/09/2013, 09:08

Ngày tải lên: 25/01/2014, 00:20

... Remarkably, we have found that, at least in some circumstances, a quantitative correlation to biophysical data can be obtained from a statistical analysis of selected phage populations [16] We also ... denaturant as a selective pressure to The potential for obtaining quantitative biophysical information from phage-display was suggested by a new method called alanine shotgun scanning, which analyzes ... association of the variable heavy chain (VH) with protein A was used as a surrogate for direct stability measurements The VH domains in camelid heavy chain antibodies are most similar to the classical...

Ngày tải lên: 19/02/2014, 12:20

... final model Linear discriminant analysis (LDA) This statistical multivariate method is supervised It searches for the variables containing the greatest interclass variance and the smallest intraclass ... scans at a resolution of cm)1 The spectra were baseline corrected and normalized for equal area between 1711 and 1485 cm)1 Spectra were encoded every cm)1 Data analysis All spectra were treated ... cell spectrum and spectral areas selected by genetic algorithm A smear of about · 105 cells was dried on an area of cm2 on the germanium surface as explained in Materials and methods Wavenumbers...

Ngày tải lên: 21/02/2014, 03:20

... under any assignment of a node to the quantified variable, the formula is false Universally quantified formulae are evaluated similarly The evaluation of a boolean connective is a straightforward ... NEGRA export format (Brants, 1997) This format is designed for data exchange and to be readable by humans It is not very well suited as a format to be queried, because relations between nodes are ... therefore needs to opt for a general data structure And the one data structure that fits most easily with all treebank formats is that of a finite first-order structure One big advantage of the approach...

Ngày tải lên: 22/02/2014, 02:20

... translation In Proceedings of MT Summit X, pages 79–86, Phuket, Thailand Validation The tool also provides functionalities allowing users to create a database of manually validated MWEs from among ... Greek are special noun phrases, called lexical phrases (Anastasiadi-Symeonidi, 1986) or loose multi-word compounds (Ralli, 2005): - Adjective+Noun: anoiqt  θˆlassa (anichti thalassa, ’open sea’), ... is also automatically found, highlighted and displayed next to the original context (see Figure 1) Thus, users can see how a MWE has previously been translated in a given context Anna Anastasiadi-Symeonidi...

Ngày tải lên: 22/02/2014, 02:20

... various parts of SWAN most accurate and robust parsers available and implemented in Java, as is the rest of our system References Other external libraries include Apache Tika3 , [Aluisio et al.2001] ... evaluation metrics, automatic and manual ones Automatic metrics are solely implemented as text analysis of the original document using NLP tools An example would be locating judgemental word patterns ... manuscript For the well-known Adobe’s portable document format (PDF) we use state-of-the-art freely available PdfBox extractor2 Unfortunately, PDF format is originally designed for layout and...

Ngày tải lên: 22/02/2014, 03:20

... the 4th DARPA Speech and Natural Language Workshop, pages 152-157, Pacific Grove, CA., 1991 Morgan Kaufmann [Gale and Church, 1991b] William A Gale and Kenneth W Church A program for alinging ... concrete example An English and a French versions of a software manual contain 628 and 640 paragraphs, respectively In all, there are 30 paragraphs embedded in them which not have a translation (some ... considered The actual score for deciding that two paragraphs are matched also takes into consideration a sequence of paragraphs immediately preceding and following them (see figure for an illustration)...

Ngày tải lên: 22/02/2014, 10:20

... Pennsylvania, USA Maja Popovi´ , Adri` de Gisper, Deepa Gupta, Patrik c a Lambert, Hermann Ney, Jos´ Mari˜ o, and Rafael e n Banchs 2006 Morpho-syntactic information for automatic error analysis ... translation edit rate with targeted human notation In Proceedings of AMTA, pages 223–231, Cambridge, Massachusetts, USA Sara Stymne and Lars Ahrenberg 2010 Using a grammar checker for evaluation ... WordNet, and is only available for English The paraphrase module is based on an automatic paraphrase induction method (Bannard and Callison-Burch, 2005), it is currently trained for five languages,...

Ngày tải lên: 07/03/2014, 22:20

... evoluzione ambientale olocenica della pianura costiera ferrarese e dell’antistante mare adriatico Conferenza Le pianure: Conoscenza e salvaguardia; il ruolo delle scienze della terra, Ferrara – (abstract ... della Pianura Padana—uno strumento per valutare la qualita’ dell’ambiente Conferenza Le pianure: Conoscenza e salvaguardia; il ruolo delle scienze della terra, Ferrara pp 131 – 133 (abstract ... light microscope and XRPD analysis, revealed that these coarse grains are mainly characterised by quartz, minor amounts of carbonates and feldspars, and lithic fragments containing amphiboles –pyroxenes,...

Ngày tải lên: 15/03/2014, 23:22

... by a natural-language generation component that is able to realize textual equivalents of all possible propositions A search in the interface for “flatter,” for example, offers a list of relevant ... relevant frames such as flatters Upon selecting this frame, an annotator is able to supply arguments by choosing actors from a list of declared characters “The fox flatters ... linear sequence of states) Additional timelines can represent multi-state beliefs, goals or plans In the course of authoring actions and statives, annotators create a detailed temporal framework...

Ngày tải lên: 17/03/2014, 02:20

... such as the possibility of changing parameters for the LSA algorithm and visualizing the results, or as the integrated programs for the computational lexicons tool: ManageLex (http://nats-www informatik.uni-hamburg.de/view/ ... are associated to only one kind of information (e.g color red associated to definitions, etc.) LSA Applications - It presents the application areas for the LSA, LSA limitations and critics Also a ... Mathematical Fundamentals - It describes the LSA algorithm The G.U.I follows the same design rules in all modules and the layout and format decisions are consistent A color and a font style are...

Ngày tải lên: 17/03/2014, 02:20

Ngày tải lên: 19/03/2014, 00:20

... General-Secretary, Sri Lanka Nidahas Sevaka Sangamaya (SLNSS), Sri Lanka “The gender audit paved the way for a broader debate on equality issues within our organisation, not only related to gender, but also in ... WHAT IS AN ILO PARTICIPATORY GENDER AUDIT? A participatory gender audit is a tool and a process based on a participatory methodology to promote organizational learning at the individual, work ... contact vertically with their superiors and peers); and the lack of proactive structures for sharing, learning and adapting These features in an organization’s culture are particularly unfavourable...

Ngày tải lên: 23/03/2014, 02:20

... Austria October 2007 STI/PUB/1297 IAEA Library Cataloguing in Publication Data Comprehensive audits of radiotherapy practices : a tool for quality improvement : Quality Assurance Team for Radiation ... COMPREHENSIVE AUDITS OF RADIOTHERAPY PRACTICES: A TOOL FOR QUALITY IMPROVEMENT COMPREHENSIVE AUDITS OF RADIOTHERAPY PRACTICES: A TOOL FOR QUALITY IMPROVEMENT QUALITY ASSURANCE TEAM FOR RADIATION ONCOLOGY ... Quality control Radiation — Safety measures I International Atomic Energy Agency IAEAL 07–00489 FOREWORD As part of a comprehensive approach to quality assurance (QA) in the treatment of cancer...

Ngày tải lên: 23/03/2014, 04:20