2 gene expression data — fact table
Báo cáo hóa học: " Research Article Clustering of Gene Expression Data Based on Shape Similarity" potx
... analysis for gene expression data: a survey,” IEEE Transactions on Knowledge and Data Engineering, vol 16, no 11, pp 1370–1386, 2004 [2] M H Asyali, D Colak, O Demirkaya, and M S Inan, Gene expression ... sampled gene expression time-series data, ” Fuzzy Sets and Systems, vol 152, no 1, pp 49–66, 2005 [10] R Balasubramaniyan, E H¨ llermeier, N Weskamp, and J u K¨ mper, “Clustering of gene expression data ... Scale factor 1 1 0.25 0.25 1 0.25 0.25 Table 2: Standard deviation vectors for clusters in “low-noise” sample datasets Table 4: Subcluster replicates and total vector sizes for “high-noise” datasets...
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Báo cáo hóa học: " Research Article The Wavelet-Based Cluster Analysis for Temporal Gene Expression Data" pptx
... temporal gene expression data are readily available, methods and strategies for analysis of these complex data sets are still emerging Because the unique feature of temporal gene expression data ... extract expression patterns in temporal gene expression data with continuous wavelet analysis It has been demonstrated that the application of wavelet transformation to gene temporal expression data ... by SAS and Matlab 3.1 RESULT AND ANALYSIS The variation of gene expression profile A large data set was generated from a unique gene expression experiment where activity of the promoter of the...
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Báo cáo hóa học: " Research Article Inferring Time-Varying Network Topologies from Gene Expression Data" docx
... data SSM on undersampled data SSM on interpolated data CoD on original data CoD on undersampled data CoD on interpolated data Edges inferred fnew flost 14 — — 12 — — — — — — 2 on whether these frameworks ... each gene Gene symbol Change point I Change point II Change point III Bmp7 Rara Pax2 Gata3 Gata2 Gdf11 Npnt Cd44 Pgf Pbx1 Ret 6 — — — 5 — 10 11 12 — 10 12 11 11 12 10 12 16 15 12 18 20 16 15 — 20 ... Consider N gene expression profiles, g (1) , g (2) , , g (N) ∈ RT , T being the length of each gene s temporal expression profile (as obtained from microarray expression) The jth time instant of gene...
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Báo cáo hóa học: " Research Article Clustering Time-Series Gene Expression Data Using Smoothing Spline Derivatives" pptx
... multidimensional gene expression data which have been subjected to clustering algorithms We first compared heatmaps obtained on two different data matrices: the matrix of discretized smoothed gene expression ... time series gene expression data, ” Bioinformatics, vol 21, supplement 1, pp i159–i168, 2005 [7] C D Giurcˇ neanu, I Tˇ bus, and J Astola, “Clustering time a a ¸ series gene expression data based ... clustering gene expression data, ” Bioinformatics, vol 17, no 9, pp 763–774, 2001 [21] H Chipman, T J Hastie, and T Tibshirani, “Clustering microarray data, ” in Statistical Analysis of Gene Expression...
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Báo cáo hóa học: " The Local Maximum Clustering Method and Its Application in Microarray Gene Expression Data Analysis" docx
... M2 M2 — — — — — — — — 57 AML BM — M2 F B133 60 AML BM — M2 M B141 31 50 AML AML BM BM — — M4 M4 — — B142 54 AML BM — M4 F 36 30 AML AML BM BM — — M5 M5 — — B211 Samples B132 63 AML PB — — F B212 ... BM — — M 65 AML BM — — M 35 38 61 32 AML AML AML AML BM BM BM BM — — — — M1 M1 M1 M1 — — — — B131 58 34 28 37 51 29 33 53 AML AML AML AML AML AML AML AML BM BM BM BM BM BM BM BM — — — — — — — — ... B-cell B-cell B-cell B-cell B-cell B-cell B-cell B-cell B-cell B-cell B-cell — — — — — — — — — — — — — — — — — — — F F F F F F F F F F F F F F F F F F F A113 17 16 21 45 22 25 24 47 49 ALL ALL...
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The Biological Sample Classification Using Gene Expression Data
... their expression level The cDNA microarray experiments provide the data and a “genomic” viewpoint on gene expression There exist two different types of gene expression data to reconstruct gene ... measurement of each gene This means that the more number of genes a particular gene regulates, the more important this gene is In gene expression analysis, a gene is considered as a factor causing ... Technology 14 1.4.1 Pre-processing step on raw data Arising from Step of the overall analysis process is the gene expression data The quality of gene expression data strongly depends on the equiments...
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Báo cáo y học: "ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data" doc
... meaning from high throughput data ExpressionPlot offers the gene expression community an easy-to-use tool for automated analysis of gene expression and RNA processing data The back end offers a ... (FASTQ files) or Affymetrix array data (CEL files), completed alignments (BAM files), or tables of gene expression values and changes generated by other back ends Once data are pre-processed, the webbased ... plot changes in gene expression and RNA processing, browse hyperlinked tables of changed genes and splicing events, generate read plots from a genomic view, compare different datasets (including...
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Báo cáo y học: " Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection." ppsx
... plant gene expression data BMC Syst Biol 2007, 1:37 Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S: Recursive regularization for inferring gene networks from time-course gene expression ... time-course gene expression data Biostatistics 2007, 8:507-525 Shiraishi Y, Kimura S, Okada M: Inferring cluster-based networks from differently stimulated multiple time-course gene expression data ... high if gene- gene relationships were considered, but the presented approach is based on cluster centroid expression profiles, which in turn represent the expression trend of sets of genes and...
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báo cáo khoa học: " Discovery of microvascular miRNAs using public gene expression data: miR-145 is expressed in pericytes and is a regulator of Fli1" pps
... 10-4 Lung enrichment, microarray data (P-value) 10-5 0.4 Figure Identification of putative microvessel-enriched miRNAs using public expression data (a) Table of datasets included in the analysis ... compendia with microarray data from mouse tissues, including lung [17,18], were downloaded from the NCBI Gene Expression Omnibus repository To ensure consistent mapping between datasets, clone/probe ... 2009, (a) Dataset Mature miRNAs n/a Landgraf et al small RNA sequence library 429 65 Thompson et al microarray dataset 115 Beuvink et al microarray dataset 136 Annotation: 0.1 miRBase r10.1 Expression: ...
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Báo cáo sinh học: "ANMM4CBR: a case-based reasoning method for gene expression data classification" docx
... human genes We used 2,000 genes with the highest minimal intensity across the samples selected by [25] SRBCT The SRBCT data [5] contains gene- expression data from cDNA microarrays of 2308 genes ... acute myeloid leukemia (AML) with the expression levels of 7,129 genes Colon The Colon data contains expression levels of 40 tumor and 22 normal colon tissues The data was analyzed with an Affymetrix ... simulated data We used a noisy version of the simulated data in [23] The original data assumes three different normal distributions for both insignificant genes (null cases) and significant genes...
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Báo cáo sinh học: "A robust approach based on Weibull distribution for clustering gene expression data" pps
... here treat one gene expression as a random variable, and construct the distribution of the gene expressions of gene i We then choose a subset of genes whose distributions of the gene expressions ... three gene expression data sets containing missing values and compared the overlapped degree between the gene clusters for incomplete data sets and the ones for complete data sets These three data ... (WDCM) for clustering gene expression data It is based on the idea that a group of genes tend to be clustered together if the distributions of gene expressions of these genes belong to the common...
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Báo cáo y học: ":Identification of novel stem cell markers using gap analysis of gene expression data" ppsx
... markers from heterogeneous collections of samples of DNA microarray data of gene expression We have applied this method to a highly heterogeneous set of stem cell gene expression data, with the objective ... NCBI gene annotation data [ftp://ftp.ncbi.nih.gov /gene/ DATA/ gene2 go.gz] Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM: Systematic determination of genetic network architecture Nat Genet ... methodology that uses large heterogeneous gene expression datasets to identify genes that can function as markers In summary, we examine the distribution of expression values of each probe set...
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Báo cáo y học: " Indirect genomic effects on survival from gene expression data" doc
... by transcription factors We consider a data set with genes, the expression levels of which are measured using material from patients Note that the data consists of both the gene expression measurements ... subsequent text We have gene expression data for both genes from cancer patients and censored survival data from the same patients It is known that expression of PPARD influences expression of ADFP ... other genes by changing their expression level Each interaction was then of the form gene A → gene B, which we write as A → B, representing that the expression of gene A influences the expression...
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Báo cáo sinh học: " Bootstrapping of gene-expression data improves and controls the false discovery rate of differentially expressed genes" ppsx
... the total number of detected genes Hence, controlling the FDR may be a reasonable strategy The non-Normality of gene- expression data hampers the ranking of the gene- expression effects for their ... analysis of appropriately transformed gene- expression data, either using Least Squares (LS, [12]) with homogeneous or heterogeneous error variance (heterogeneous error variance implies that a ... for any non-normality of the transformed gene- expression data [8] However, which of these methods is most appropriate for the analysis of gene- expression data is not clear The aim of this study...
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Báo cáo y học: "Consensus clustering and functional interpretation of gene-expression data" docx
... for the B-cell lymphoma data (Table 2) Robust clusters are therefore valuable for allowing a rapid 'drilling down' in a gene- expression dataset to groups of genes whose coexpression pattern is ... the gene- expression data for a single clustering algorithm [19] We have therefore designed a similar strategy to identify the consistently clustered gene- expression profiles in microarray datasets ... contigency table by: Synthetic datasets − ( x − µ )T Σ −1 ( x − µ ) e 2 N = ∑ ∑ Countij = reviews The second dataset consists of a series of 26 arrays (1,987 filtered genes) measuring gene- expression...
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Báo cáo y học: "Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data" potx
... in the down-regulation of gene expression The absolute gene expression levels and the predicted miRNA regulation are anti-correlated The overall decrease in the gene expression of the transcripts ... samples at the probe-level from microarray datasets (Table 1) downloaded from the Gene Expression Omnibus (GEO) database [101] The Novartis gene expression atlas includes 79 samples, each having ... Additional data file 1) A similar trend is observed when comparing the datasets of transcripts encoding ordered and Table miRNA targeting of disordered proteins with different gene expression...
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Data mining techniques in gene expression data analysis
... 34 149 43 34 Table 2.1: Gene Expression Datasets coded in Standard C Datasets: We use four popular gene expression datasets for experimental studies The four datasets were clinical data on ALL-AML ... be applied to other high-dimensional databases besides gene expression data Experiments on synthetic data, gene expression data and benchmark biological data are done to show the effectiveness ... instances, which is usually quite small TopkRGS runs on discretized gene expression data Dataset: the gene expression dataset (or table) D consists of a set of rows, R={r1 , , rn } Let I={i1 , i2...
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Gene expression data analysis
... 3.3.2 32 Missing Data Estimation for Gene Microarray Expression Data Gene expression microarray experiment can generate data sets with multiple missing expression values [TCS+ 01] Two data sets we ... xij is the expression value of gene i in sample j x¯ik is the mean expression value in class k for gene i n is the total number of samples x¯i is the general mean expression value for gene i si ... 33 biological area, including gene expression data analysis and protein classification According to [Aas01], let y ˜ be the gene expression vector to be the gene expression vector to be classified...
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Generic Nissan Ecu Sensor Or Data Register Table Ver 2
... VAL=0x00 =0%, 0x8C=100% IACV/FICD-SOLENOID 0x87 VAL=0x00 =OFF POWER BALANCE TEST 0x88 DIGITAL (see table below), Some ECU types use 0x01 to 0x08 to select cylinder (SR20, ?) FUEL PUMP RLY TEST 0x89 ... 1=OFF 0=ON Bit CYL3 1=OFF 0=ON Bit CYL2 1=OFF 0=ON Bit CYL1 1=OFF 0=ON A/T ECU Sensor Register Table INITIALISATION 0xFF 0xFF 0xEA STREAM ALL AVAILABLE SENSORS 0x9F SELF DIAGNOSTIC 0xD1 ERASE ... S/V SHIFT S/V B SHIFT S/V A 0x09 0x0A P/N POSI SW D-POS SW 2-POS SW 1-POS SW S-HICAS ECU Register Table (hydraulic) INITIALISATION 0xFF 0xFF 0xE4 STREAM ALL AVAILABLE SENSORS 0x9F SELF DIAGNOSTIC...
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