General organic and biological chemistry structures of life CH 19 1 proteins amino acids GOB structures 5th ed

Lecture Presentation Chapter 19 Amino Acids and Proteins Karen C Timberlake General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Chapter 19 Amino Acids and Proteins • Radiology technicians work with radiologists to produce images that allow for the diagnosis and treatment of certain medical conditions • Technicians operate imaging equipment such as X-ray, computed tomography (CT), and positron emission tomography (PET) General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Chapter 19 Readiness Key Math Skill • + Calculating pH from [H3O ] (11.6) Core Chemistry Skills • • • Writing Equations for Reactions of Acids and Bases (11.7) Naming Carboxylic Acids (16.1) Forming Amides (18.5) General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc 19.1 Proteins and Amino Acids Protein molecules, compared with many of the compounds we have studied, can be gigantic The horns of animals are made of proteins Learning Goal Classify proteins by their functions Give the name and abbreviations for an amino acid, and draw its zwitterion General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Functions of Proteins Proteins • • in the body are polymers made from 20 different amino acids differ in characteristics and functions that depend on the order of amino acids that make up the protein • • form structural components such as cartilage, muscles, hair, and nails function as enzymes to regulate biological reactions such as digestion and cellular metabolism • including hemoglobin and myoglobin transport oxygen in the blood General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Structural Classification of Proteins and Functions General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Amino Acids Amino acids, the molecular building blocks of proteins, have a central carbon atom called the α carbon, bonded to • + − two functional groups: an ammonium group (— NH ) and a carboxylate group (— COO ) • a hydrogen atom and an R group or side chain in addition to the carboxylate and ammonium groups General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Zwitterions At physiological pH, the • ionized ammonium and carboxylate groups give an amino acid a balance of positive and negative charge, which gives an overall zero charge • neutral amino acid, which is called a zwitterion, occurs at a specific pH value known as its isoelectric point (pI) Core Chemistry Skill Drawing the Zwitterion for an Amino Acid General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Classification of Amino Acids Amino acids are classified using their specific R groups The • • • nonpolar (hydrophobic) amino acids have hydrogen, alkyl, or aromatic R groups polar amino acids have R groups that interact with water, which makes them hydrophilic polar neutral amino acids contain an hydroxyl (— OH), a thiol (— SH), or an amide (— CONH 2) R group • polar acidic amino acids contain a carboxylate − (— COO ) R group • polar basic amino acids contain an ammonium + (— NH3 ) R group General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Classification of Amino Acids A summary of amino acid types and their interactions with water General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Nonpolar Amino Acids An amino acid is nonpolar when the R group is H, alkyl, or aromatic General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Polar Amino Acids, Neutral R Groups An amino acid is polar when the R group is an alcohol, a thiol, or an amide General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Amino Acids, Charged R Groups − An amino acid is charged when the R group is a carboxylate (— COO ) or an ammonium (— + NH3 ) group General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Study Check Draw the zwitterions for the amino acids serine and aspartate General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Solution Draw the zwitterions for the amino acids serine and aspartate ANALYZE Given Need THE serine draw the zwitterions PROBLEM aspartate Serine General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake Aspartate © 2016 Pearson Education, Inc Amino Acid Abbreviations Amino acids have • • three-letter abbreviations derived from their names, given in Table 19.2 one-letter abbreviations to allow the faster transfer of data Of the 20 amino acids, • 11 have one-letter abbreviations that are the same as the first letter in their names and use different letters • arginine R and tyrosine Y use the second letters in their names; phenylalanine is F; and lysine is K, which is near L in the alphabet General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Amino Acid Stereoisomers Amino acids can exist as D and L stereoisomers called enantiomers We draw Fischer projections for αamino acids by placing • • the carboxylate group at the top the R group at the bottom • + the — NH3 group of the L isomer on the left • + the — NH3 group of the D isomer on the right General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Study Check Identify the following amino acids as A D or L enantiomers: B – COO + H3N––C––H CH2 H COO – + C ––NH3 CH2 OH General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Solution Identify the following amino acids as A D or L enantiomers: B – COO + H3N––C––H H COO – + C ––NH3 CH2 CH2 OH L-Phenylalanine General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake D-Serine © 2016 Pearson Education, Inc Chemistry Link to Health: Essential Amino Acids Of the 20 amino acids used to build the proteins in the body, • • only 11 can be synthesized in the body; the other are essential amino acids that must be obtained from the proteins in the diet General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Chemistry Link to Health: Essential Amino Acids Complete proteins such as eggs, milk, meat, and fish contain all of the essential amino acids Incomplete proteins from plants such as grains, beans, and nuts are deficient in one or more essential amino acids General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc  ... ) and a carboxylate group (— COO ) • a hydrogen atom and an R group or side chain in addition to the carboxylate and ammonium groups General, Organic, and Biological Chemistry: Structures of Life, ... group General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Classification of Amino Acids A summary of amino acid types and their... Proteins and Functions General, Organic, and Biological Chemistry: Structures of Life, 5/e Karen C Timberlake © 2016 Pearson Education, Inc Amino Acids Amino acids, the molecular building blocks of