Amino acids, peptides and proteins in organic chemistry: volume 5 analysis and function of amino acids and peptides

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Amino Acids, Peptides and Proteins in Organic Chemistry:Volume 5 - Analysis and Function of Amino Acids and Peptides
- Contents
- List of Contributors
- 1 Mass Spectrometry of Amino Acids and Proteins
  - 1.1 Introduction
    - 1.1.1 Mass Terminology
    - 1.1.2 Components of a Mass Spectrometer
    - 1.1.3 Resolution and Mass Accuracy
    - 1.1.4 Accurate Analysis of ESI Multiply Charged Ions
    - 1.1.5 Fragment Ions
    - 1.2 Basic Protein Chemistry and How it Relates to MS
      - 1.2.1 Mass Properties of the Polypeptide Chain
      - 1.2.2 In Vivo Protein Modi.cations
      - 1.2.3 Ex Vivo Protein Modi.cations
      - 1.3 Sample Preparation and Data Acquisition
        1.3.1 Top-Down Versus Bottom-Up Proteomics
        1.3.2 Shotgun Versus Targeted Proteomics
        1.3.3 Enzymatic Digestion for Bottom-Up Proteomics
        1.3.4 Liquid Chromatography and Capillary Electrophoresis for Mixtures in Bottom-Up
        1.4 Data Analysis of LC-MS/MS (or CE-MS/MS) of Mixtures
        1.4.1 Identi.cation of Proteins from MS/MS Spectra of Peptides
        1.4.2 De Novo Sequencing
        1.5 MS of Protein Structure, Folding, and Interactions
        1.5.1 Methods to Mass-Tag Structural Features
        1.6 Conclusions and Perspectives
        References
        2 X-Ray Structure Determination of Proteins and Peptides
        2.1 Introduction
        2.1.1 Light Microscopy

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Amino acids, peptides and proteins in organic chemistry: volume 5 analysis and function of amino acids and peptides

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Amino Acids, Peptides and Proteins in Organic Chemistry:Volume 5 - Analysis and Function of Amino Acids and Peptides

Contents

List of Contributors

1 Mass Spectrometry of Amino Acids and Proteins

1.1 Introduction

1.1.1 Mass Terminology

1.1.2 Components of a Mass Spectrometer

1.1.3 Resolution and Mass Accuracy

1.1.4 Accurate Analysis of ESI Multiply Charged Ions

1.1.5 Fragment Ions

1.2 Basic Protein Chemistry and How it Relates to MS

1.2.1 Mass Properties of the Polypeptide Chain

1.2.2 In Vivo Protein Modi.cations

1.2.3 Ex Vivo Protein Modi.cations

1.3 Sample Preparation and Data Acquisition

1.3.1 Top-Down Versus Bottom-Up Proteomics

1.3.2 Shotgun Versus Targeted Proteomics

1.3.3 Enzymatic Digestion for Bottom-Up Proteomics

1.3.4 Liquid Chromatography and Capillary Electrophoresis for Mixtures in Bottom-Up

1.4 Data Analysis of LC-MS/MS (or CE-MS/MS) of Mixtures

1.4.1 Identi.cation of Proteins from MS/MS Spectra of Peptides

1.4.2 De Novo Sequencing

1.5 MS of Protein Structure, Folding, and Interactions

1.5.1 Methods to Mass-Tag Structural Features

1.6 Conclusions and Perspectives

References

2 X-Ray Structure Determination of Proteins and Peptides

2.1 Introduction

2.1.1 Light Microscopy

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