Using computational approach in understanding gene regulatory networks for antimicrobial peptide coding genes

... promoter data for (Chapter 7) a) detection of new co-regulated genes, and b) deciphering parts of gene networks of which AMP genes are members 1.4 Contribution of this thesis AMP -coding genes and ... region analysis to find new AMP genes and co-regulated genes is a first of its kind approach in the field of antimicrobial peptides The results of this analysis can guide t...

Ngày tải lên: 14/09/2015, 09:05

... also involves studying gene interactions at the transcriptional regulatory level and at protein interaction level GRNs for certain lineage specification have been mapped in detail in invertebrate ... urchin and in certain in vitro model systems for vertebrates Studying GRNs in vertebrate development poses various challenges, arising from the complexity of the genome and...

Ngày tải lên: 04/10/2015, 16:03

... Construction of Gene Regulatory Networks using biclustering and Bayesian networks Fadhl M Alakwaa1*§, Nahed H Solouma and Yasser M Kadah3* University of Science and Technology, Sana'a, Yemen Department of ... supported by a grant from the University of Science & Technology, Yemen The authors would like to thank Prof Dana Pe'er, Columbia University; Dr Kevien Yip, Y...

Ngày tải lên: 13/08/2014, 16:20

... introduce a stochastic generalization of polynomial dynamical systems, namely, probabilistic polynomial dynamical systems, which is also a generalization of the above-mentioned probabilistic Boolean ... models In the next section, we present our method for the reverse engineering of gene regulatory networks as probabilistic polynomial dynamical systems Th...

Ngày tải lên: 21/06/2014, 03:20

... the sensing and data transmission in accordance with the PRR based time slot allocation, while the PHY layer performs adaptive modulation and coding to allow data transmission rate adaptation At ... action can be taken Sensing information can be a consideration for QoS requirements especially in multimedia application as it can assist C -UWB to dynamically allocate app...

Ngày tải lên: 21/06/2014, 11:20

... Inference, Morgan Kaufmann, San Francisco, Calif, USA, 1988 [2] N Friedman, M Linial, I Nachman, and D Pe’er, “Using Bayesian networks to analyze expression data,” Journal of Computational Biology, ... O Yli-Harja, and J Astola, Inference of genetic regulatory networks via best-fit extensions,” in Computational and Statistical Approaches to Genomics, pp 197–210, chapter 11, Kluwer...

Ngày tải lên: 21/06/2014, 22:20

... Island of Hawaii, Hawaii, USA, January 1999 [6] K Basso, A A Margolin, G Stolovitzky, U Klein, R DallaFavera, and A Califano, Reverse engineering of regulatory networks in human B cells,” Nature ... Unfortunately, there are not enough gold standard networks and appropriate experimental data available for a large comparative study For such a study one needs a sufficiently la...

Ngày tải lên: 22/06/2014, 00:20

... dynamic Bayesian networks formulation, our work has two objectives First, given a set of time-series data from a single experiment, we aim at uncovering the underlying gene regulatory networks ... inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks, ” Bioinformatics, vol 19, no 17, pp 2271–2282, 2003 [23] K P Murphy...

Ngày tải lên: 22/06/2014, 19:20

... concentrations of mRNA and proteins induced by gene i, respectively, ci (t) is the fraction of DNA fragments committed to transcription of gene i, κi is the transcription rate of gene i, and τ ... transcriptional regulatory system (tRS) We generate networks using this model and a fixed set θ of parameters We call these networks reference networks A reference network is...

Ngày tải lên: 22/06/2014, 19:20

... Prediction of mammalian microRNA targets Cell 2003, 115:787-798 doi:10.1186/gm144 Cite this article as: Sarachana T, et al.: Investigation of post-transcriptional gene regulatory networks associated with ... post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblasto...

Ngày tải lên: 11/08/2014, 12:20

... Issue Introduction, JAI-ED, 5/4, pp 417-428 Hamburger, H.& Hashim, R.(1992) Foreign Language Tutoring and Learning Environment, In " Intelligent Tutoring Systems for Foreign Language Learning, ... System, Proc Language Teaching and Language Technology, Univ of Groningen Swartz, M.L & Yazdani, M (eds.) (19992) Intelligent Tutoring Systems for Foreign Language Learnin...

Ngày tải lên: 31/03/2014, 04:20

... locate and validate candidate cis- regulatory elements for developmental control genes that are ancient in origin and conserved in evolution 1.1 Cis- Regulatory Elements Cis- regulatory elements ... methods to locate and validate cis- regulatory elements 17 1.5 Genomics era methods to locate and validate cis- regulatory elements ……20 1.6 In silico predic...

Ngày tải lên: 14/09/2015, 08:40

... aesthetics and originality ratings for a given image A plot of 3581 unique photograph ratings can be seen in Fig As can be seen, aesthetics and originality ratings have approximately linear correlation ... Approach A classic treatise on psychological theories for understanding human perception can be found in [2] Here, we take the first step in using a computational ap...

Ngày tải lên: 07/03/2014, 17:20

... Zhang and Moret: Refining transcriptional regulatory networks using network evolutionary models and gene histories Algorithms for Molecular Biology 2010 5:1 Publish with Bio Med Central and every ... ancestral networks once we have the genes of these networks We this using a revised version of FastML Refine the leaf networks with new versions of RefineFast and...

Ngày tải lên: 12/08/2014, 17:20

... on a single outside interface Cisco PIX Firewall and VPN Configuration Guide 5-6 78-13943-01 Chapter Using PIX Firewall in SOHO Networks Using the PIX Firewall DCHP Server Using the PIX Firewall ... Chapter Using PIX Firewall in SOHO Networks Using the PIX Firewall PPPoE Client Enabling PPPoE on the PIX Firewall Note You must complete the conf...

Ngày tải lên: 27/10/2013, 07:15