Báo cáo y học: " DISTILLER: a data integration framework to reveal condition dependency of complex regulons in" ppsx

... Abeygunawardena N, Coulson R, Farne A, Holloway E, Kolesnykov N, Lilja P, Lukk M, Mani R, Rayner T, Sharma A, William E, Sarkans U, Brazma A: ArrayEx- press - a public database of microarray experiments ... 7:R37. 20. Tanay A, Sharan R, Kupiec M, Shamir R: Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide...

Ngày tải lên: 14/08/2014, 21:20

... Access ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data Brad A Friedman 1,2,3* and Tom Maniatis 4 Abstract RNA-Seq and microarray platforms have ... gene expression analysis of RNA-Seq and microarray data. * Correspondence: brad.aaron.friedman@gmail.com 1 Department of Molecular and Cell Biology, Harvard University, 7 Divinity A...

Ngày tải lên: 09/08/2014, 23:20

... large-scale data analysis as well as for the integration of mult idimensional data with clinical parame ters and knowledge available in bio-databases. In addition, it is evident that until data ... facilitates the integration of various data formats, bio-databases and analysis techniques. Anduril manages and automates ana- lysis workflows from importing raw data to reporti...

Ngày tải lên: 11/08/2014, 12:20

... commercially available software pack- ages for microarray experiments have a built in flagging func- tion, and ProCAT will automatically discard flagged spots. A key aspect of ProCAT is the two-parameter ... number of test arrays and negative control arrays for one particular assay. Data file format describes the layout in the uploaded dataset so that ProCAT can recognize and extrac...

Ngày tải lên: 14/08/2014, 17:22

... chromosomal inversions (Additional data file 1). To achieve an annotation as accurate as possible, we anno- tated 8013's genome manually by taking advantage of all the functionalities of the ... (MaGe) for data visualization and exploration; and the large Prokaryotic Genome DataBase (PkDGB) for data storage, which contains more than 400 microbial genomes. We devoted particula...

Ngày tải lên: 09/08/2014, 20:20

... 6 of 13 are examples of metadata) - to repeat an analysis exactly. When a user performs an analysis using Galaxy, it automatically generates metadata for each analysis step. Galaxy’s metadata ... Galaxy’s history panel pr ovides access to both automatically tracked metadata and user metadata (Figure 1) within the analysis workspace, and hence users can see all reproducibility metada...

Ngày tải lên: 09/08/2014, 20:22

... experiments: All_AC3_Fwd: 5'- CATGAGCTCGGATCCATGGAT- TCACGCACAGGG -3' All_AC3_Rev: 5'- CCATCTAGACTCGAGTGGCRTG- TACTCAYGCCTCTAAYCC -3' ToLCV_AC1_Fwd: 5'- CATGGATCCATGGCHVCYC- CMAAWCG ... biochemical characterization of the viral protein. The enhancement of AC1-mediated ATPase activity might lead to increased viral DNA replication. Background Tomato leaf curl dis...

Ngày tải lên: 12/08/2014, 04:20

... To avoid bias by repeating analysis of data from the same patient, each patient was included only once in the statistical analysis. In addition, we wished to focus on the age of the children and ... in accordance with the COMFORT classification. Data are expressed as mean ± standard deviation in the case of a normal distribution and interval scaling level, and as median (range...

Ngày tải lên: 12/08/2014, 20:20

... conditions. As digital sound recorders have significant advantages over video recorders, ambulatory digital audio recording should now provides the gold standard for ambulatory validation of automated ... therefore not applicable to clinical practice. Digital audio recording devices have sev- eral advantages over video. Firstly, long ambulatory recordings can be made allowing cough monito...

Ngày tải lên: 13/08/2014, 08:20

... Henry DI Abarbanel 2 Address: 1 Max-Planck-Institute of Neurobiology, Martinsried, Germany and 2 Department of Physics and Marine Physical Laboratory (Scripps Institution of Oceanography), ... the optimal estimate of the voltage signal, lead- ing to a calcium influx and consequently to the optical sig- nal of bound indicator. Clearly, the advantage of this method is that...

Ngày tải lên: 13/08/2014, 16:21