Báo cáo y học: "Celsius: a community resource for Affymetrix microarray data" pot

... cited. Celsius: a warehouse for microarray data<p>Celsius is a new system that serves as a warehouse by aggregating Affymetrix files and associated metadata, and containing the largest publicly available ... Bioinformatics 2005, 21:1495-1501. 3. Rhodes D, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan A: Large-scale meta-analysis of c...

Ngày tải lên: 14/08/2014, 07:21

... biochemical pathway (for sulfur metabolism) that may potentially be important for nasopharyngeal colonization. Conclusions: By improving our capacity to understand gene function in an important human pathogen, ... chromosomal inversions (Additional data file 1). To achieve an annotation as accurate as possible, we anno- tated 8013's genome manually by taking advantage of all the funct...

Ngày tải lên: 09/08/2014, 20:20

... Keerthikumar S, Mathivanan S, Patankar N, Shafreen B, Renuse S, Pawar H, Ramachandra YL, Prasad TSK, Acharya PK, Ranganathan P, Chaerkady R, Pandey A: Human Proteinpedia: A unified discovery resource for ... Hariprasad Padhukasahasram 1 , Yashwanth Subbannayya 1 , Renu Goel 1 , Harrys KC Jacob 1,2 , Jun Zhong 2 , Raja Sekhar 1 , Vishalakshi Nanjappa 1 , Lavanya Balakrishnan 1 , Roopash...

Ngày tải lên: 09/08/2014, 20:21

... inadequate because substantial renal tissue damage can occur before function is impaired to a detectable extent [4]. Renal biopsy remains the gold standard for assessment of LN disease activity. ... injury has anti- inflammatory effects [5]. In the current paper by Schwartz and colleagues, TWEAK was assessed as a biomarker for LN in both cross-sectional and longitudinal studies. In th...

Ngày tải lên: 09/08/2014, 14:22

... S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick ... computational analysis. WS and DH analyzed the data. WS, DH and ML wrote the manuscript. All authors read and approved the final manuscript. Acknowledgements We thank Benjamin Haley for sharing ....

Ngày tải lên: 09/08/2014, 20:21

... of 13 are examples of metadata) - to repeat an analysis exactly. When a user performs an analysis using Galaxy, it automatically generates metadata for each analysis step. Galaxy’s metadata includes ... computational biology experiment. Galaxy provides a framework for perform- ing computational analyses, systematically repeating ana- lyses, capturing all details of performed analyses,...

Ngày tải lên: 09/08/2014, 20:22

... transcription factor genes in prostate cancer. Science 2005, 310:644-648. 24. Soda M, Choi YL, Enomoto M, Takada S, Yamashita Y, Ishikawa S, Fujiwara S, Watanabe H, Kurashina K, Hatanaka H, Bando ... resulting as fusion candidates are discarded because their homology can potentially cause a misa- lignment. We use TreeFam to identify and remove these candidates [36,37]. TreeFam is a datab...

Ngày tải lên: 09/08/2014, 22:23

... Consortia Program, Affymetrix introduced the 16K array GeneChip ® Vitis vinif- era (Grape) Genome Array ver. 1.0 (Affymetrix ® Inc., Santa Clara, CA), fabricated mainly for V. vinifera microarray studies. ... the database. HL and AW helped with the development of similarity search parameters and HL and EC helped with microarray data Example result pages of a Microarray databas...

Ngày tải lên: 12/08/2014, 05:20

... -GCCTCCA CTGTGCTCACTGA-3’;forwardprimerforhumanb- actin, 5’-TGGCACCCAGCACAATGAA-3’;andreverse primer for human b-actin, 5’-CTAAGTCATAGTCCGCC- TAGAAGCA-3’. Primer efficiency was determined by seri- ally diluting a standard ... Supplementary materials and methods. This table summarizes the clinical data of patients with RA, OA and AS. Additional file 2: Supplementary results. This table pro...

Ngày tải lên: 12/08/2014, 17:22

... physician to identify at an early stage those patients who are at risk for hypoten- sion (e.g. hypovolaemic patient) and to compensate for hypo- volaemia before continuing administration of vancomycin. This ... the radial artery cannula and another from the distal port of the pulmonary artery catheter) in order to measure arterial and mixed venous blood parameters that are necessary for...

Ngày tải lên: 12/08/2014, 18:21