... computational analysis. WS and DH analyzed thedata. WS, DH and ML wrote the manuscript. All authors read and approved thefinal manuscript.AcknowledgementsWe thank Benjamin Haley for sharing ... Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick ... log-likelihoodscore that evaluates hairpin stability, minimum freeenergy, read abundance, and the presence of an associ-ated miR* sequence. These scores are based on Bayesianprobabilities that are calibrated...