Báo cáo sinh học: "Fast local fragment chaining using sum-of-pair gap costs" pptx

... present. Implementation We implemented the local fragment chaining algorithm, introduced by [4,6]. In addition to the linear gap cost model in CHAIN ER, the more flexible sum-of-pair gap cost model has been incorporated ... 6:4 http://www.almob.org/content/6/1/4 Page 6 of 8 SOFTWA R E ARTIC L E Open Access Fast local fragment chaining using sum-of-pair gap costs Christ...

Ngày tải lên: 12/08/2014, 17:20

... J-J: Exact Distribution for the Local Score of One i.i.d. Random Sequence. J Comp Bio 2001, 8(4):373-380. 13. Mercier S, Hassenforder C: Exact distribution for the local score of a Markov chain. ... Molecular Biology Open Access Research Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics Grégory Nuel* Addre...

Ngày tải lên: 12/08/2014, 17:20

... somewhat extreme. The first case has a very large gap between the maximal and minimal degree of internal nodes, while the second has little or no gap. The theoretical performance of the algorithm ... and and all subtrees in both trees can be done using: where F i are all subtrees of T r and G j are all subtrees of . This can be calculated using dynamic programming in time O(n 2 ):...

Ngày tải lên: 12/08/2014, 17:20

... of the National Academy of Sciences 1986:5155-5159. 7. Edgar R: Local homology recognition and distance measures in linear time using compressed amino-acid alphabets. Nucleic Acids Res 2004, 32(1):380-385. 8. ... compu- tations based on subword compositions as defined in [13]. This can be regarded as filling in part the gap between the rigid word length used in [13] and the shared-word...

Ngày tải lên: 12/08/2014, 17:20

... 5:5 http://www.almob.org/content/5/1/5 Page 3 of 10 of accessible regions for both input RNA sequences, (2) using a matching algorithm, computing a set of “non- conflicting” interactions between the accessible ... and RNAup with the same setting that has been used by the experiment in [16] - RNAup has been run using para- meter -b which considers the probability of unpaired regions in bot...

Ngày tải lên: 12/08/2014, 17:20

... not for citation purposes) Human Resources for Health Open Access Research Paris on the Mekong: using the aid effectiveness agenda to support human resources for health in the Lao People's ... aid- effectiveness approaches to sector level. Methods: The research adopted a case study approach using mixed research methods. It draws on a quantitative analysis of human resources for heal...

Ngày tải lên: 18/06/2014, 17:20

... PCR amplifications occur simultaneously. Using this method, we have successfullydetected and partially sequenced 3 separate viruses in human plasma without using virus-specific reagents (i.e., Adenovirus ... Respiratory Syncytial Virus B), using the novel approach of random multiplex (RT)-PCR of purified viral nucleic acids. The detection was accomplished in 7 hours using only a micro...

Ngày tải lên: 18/06/2014, 18:20

... leted o f CD3+ T cel ls using a Rosette- Sep™ Human CD3 Depletion Cocktail (StemCell Tec h- nologies, Seattle, WA, USA). Monocytes were obtained by positive selection using an EasySep ® Human ... their exhibited phenotype. In this con- text, it is obvious that the definition of DC m aturation using phenotype markers is not a distinguishing feature of immunogenicity nor tolerogenicity [4...

Ngày tải lên: 18/06/2014, 19:20

... correlating the input signal, y(t), with a locally generated replica. Correlation allows the reduction of the input noise and the extraction of the signal parameters. The local signal replica is obtained ... was causing severe noise amplification making the algorithms impractical for moderate to low signal-to-noise ratio conditions. In this paper, the noise amplification problem is mitigated...

Ngày tải lên: 18/06/2014, 22:20

... hybridization showing fragments of ACMV generated by Sau96 I, arrows indicate fragments generated in vector control and protected in siRNA producing plants (C) ChIP duplex PCR analysis using ACMV DNA ... immunoprecip- itation using anti-dimethyl histone H3 lysine 4 (H3K4) and anti-dimethyl histone H3 lysine 9 (H3K9). The ChIP PCR amplified an equal amount of ACMV DNA A pro- moter region...

Ngày tải lên: 19/06/2014, 08:20