Báo cáo sinh học: "A basic analysis toolkit for biological sequences" pps

... Conditions Start Here** 3: for d := 0 to n do 4: L[d, -1] ← -1 5: end for 6: for d := -(k + 1) to -1 do 7: L[d, |d| - 1] ← |d| - 1 8: L[d, |d| - 2] ← |d| - 2 9: end for 10: for e := -1 to k do 11: ... non- trivial implementation by Sinha and Tompa, used for motif discovery [19]. Our code, as the one by Sinha and Tompa, works only for DNA sequences. The function allowing for th...

Ngày tải lên: 12/08/2014, 17:20

... k. The analysis in Figure 10 shows that d = 1.43*exp(-0.11*t). Sub- stituting this formula for d into equation (8) and solving the differential equation gives the following expression for growth ... indefi- nitely, and this should obviate the need for periodic molting, were it not for the heavily sclerotized head capsule and mouthparts, which cannot grow and can therefore only incre...

Ngày tải lên: 06/08/2014, 18:21

... PM, Schultz M, Gerstein M: The tYNA plat- form for comparative interactomics: a web tool for man- aging, comparing and mining multiple networks. Bioinformatics 2006, 22:2968-2970. 74. Hu H, Yan ... massive biological networks for func- tional discovery. Bioinformatics 2005, 21 Suppl 1:i213-i221. 75. Werner-Washburne M, Wylie B, Boyack K, Fuge E, Galbraith J, Weber J, Davidson G: Compa...

Ngày tải lên: 06/08/2014, 18:21

... mode) for the gamma parameter, synonymous of a very small variance for the rj ’s. This is likely the result of the lack of information available for the estimation for q ... time analysis. J Dairy Sci, 67, 2999-3007 Strandberg E (1991) Breeding for lifetime performance in dairy cattle. PhD dissertation, Swedish Univ of Agricultural Science...

Ngày tải lên: 09/08/2014, 18:22

... function changing the amount of information of the prior density (see Blasco [3] for a detailed discussion about the prior information). The prior distributions for the parameters a 0 , b 0 , k 0 of the ... rabbits / Bayesian analysis 1. INTRODUCTION Growth curves can describe the entire growth process in terms of a few para- meters having a biological interpretation. Selection for...

Ngày tải lên: 14/08/2014, 13:21

... marker for horse identification and linkage analysis in this species. ACKNOWLEDGMENTS We are very grateful to the Haras Nationaux for providing blood samples, pedigree in- formation ... Pi, Pgd and Pgm for the proteins). No Lod scores exceeded 1.0 for recombination values ranging between 0.01 and 0.5. Polymorphism in the 4 breeds As for the...

Ngày tải lên: 14/08/2014, 19:22

... score for characters which are' chosen as correct characters by the sentence analysis method, as well as the score for correctly pronounced characters. Table 3. Scores after Sentence Analysis. ... through sentence analysis. 3. Each punctuation mark is used as a delimiter. Sentence analysis of Japanese reads back to front between punctuation marks. For example, the ana...

Ngày tải lên: 31/03/2014, 17:20

... for large data sets (eg, Perez-Enciso et al, 1994). When applied to large data sets, the Monte-Calro algorithm is powerful for ML analysis, but inefficient for REML analysis ... and Var(s) = I. The likelihood function for an animal model can be formulated either as [6] for ML estimation or as [12] for REML estimation. With an animal...

Ngày tải lên: 09/08/2014, 18:22

... workbench for multiple align- ment construction and analysis. Proteins 1991, 9(3):180-190. 32. Osada R, Zaslavsky E, Singh M: Comparative analysis of methods for representing and searching for transcription ... still outperforms the oth- ers, though not as significantly, with sSn and nPC values of 0.565 and 0.414 for LP/DEE; 0.550 and 0.402 for Gibbs; 0.501 and 0.358 for MEME;...

Ngày tải lên: 12/08/2014, 17:20

... (CDC15). Training data for regression analysis A training set for regression analysis, , is created by generating training points for each gene from the data matrix E. For gene n, the training ... solved by formulating an LP that included an l 1 norm penalty for deviations from equality. In con- trast, the solution to the sparse linear regression problem proposed here avoids the...

Ngày tải lên: 12/08/2014, 17:20