Báo cáo y học: "ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data" doc

... two ends of a PE read, ge ne annotation sets, expression values, and so on. Software and data availability FusionSeq is available for download at [34]. Data sets used in this study are available via ... transcription factor genes in prostate cancer. Science 2005, 310:644-648. 24. Soda M, Choi YL, Enomoto M, Takada S, Yamashita Y, Ishikawa S, Fujiwara S, Watanabe H, Kurashina K, H...

Ngày tải lên: 09/08/2014, 22:23

... 11:R86 http://genomebiology.com/2010/11/8/R86 Page 6 of 13 are examples of metadata) - to repeat an analysis exactly. When a user performs an analysis using Galaxy, it automatically generates metadata for each analysis step. Galaxy’s metadata ... computational analyses, systematically repeating ana- lyses, capturing all details of performed analyses, and annotating analyses....

Ngày tải lên: 09/08/2014, 20:22

... Access ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data Brad A Friedman 1,2,3* and Tom Maniatis 4 Abstract RNA-Seq and microarray platforms have ... 11 ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data Friedman and Maniatis Friedman and Man...

Ngày tải lên: 09/08/2014, 23:20

... Sawada T, Suzuki M, Nagasaki M, Nakayama-Hamada M, Kawaida R, Ono M, Ohtsuki M, Furukawa H, Yoshino S, Yukioka M, Tohma S, Matsubara T, Wakitani S, Teshima R, Nishioka Y, Sekine A, Iida A, Takahashi ... for the function and activity of the PAD4 enzyme were not analyzed. The three SNPs leading to amino acid changes all appear at nonconserved places, as can be deduced from an align- me...

Ngày tải lên: 09/08/2014, 01:23

... rheumatoid arthritis and ischaemic injury has anti- inflammatory effects [5]. In the current paper by Schwartz and colleagues, TWEAK was assessed as a biomarker for LN in both cross-sectional and longitudinal ... inadequate because substantial renal tissue damage can occur before function is impaired to a detectable extent [4]. Renal biopsy remains the gold standard for assessme...

Ngày tải lên: 09/08/2014, 14:22

... gluconeogenesis and both pentose-phosphate and Entner-Doudoroff pathways) and may be capable of de novo synthesis of all 20 amino acids. Inspection of the non-core Table 4 Summary of the (re)annotation ... chromosomal inversions (Additional data file 1). To achieve an annotation as accurate as possible, we anno- tated 8013's genome manually by taking advantage of all the...

Ngày tải lên: 09/08/2014, 20:20

... computational analysis. WS and DH analyzed the data. WS, DH and ML wrote the manuscript. All authors read and approved the final manuscript. Acknowledgements We thank Benjamin Haley for sharing his ... S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J...

Ngày tải lên: 09/08/2014, 20:21

... SM, Carter NP, Maloney V, Thomas NS, Jacobs PA, Crolla JA: Breakpoint mapping and array CGH in translocations: comparison of a phenotypically normal and an abnormal cohort. Am J Hum Genet ... variation. Our data indicate that SV discovery is largely dependent on the strategy used, and presently there is no single approach that can readily capture all types of variation and th...

Ngày tải lên: 09/08/2014, 20:22

... this article as: Vanderlan et al., Duodenal enteroglucagonoma revealed by differential comparison of serum and tissue glucagon reactivity with Sie- mens' Double Glucagon Antibody and DakoCytomation's ... differential comparison of serum and tissue glucagon reactivity with Siemens' Double Glucagon Antibody and DakoCytomation's Polyclonal Rabbit Anti-Human...

Ngày tải lên: 11/08/2014, 12:20

... De la Fuente-Sandoval C, Loyzaga C, Garcia-Anaya M, Meyenberg N, Nicolini H, Apiquian R: A force d five-dime nsional factor analysis and concurrent validity of the Positive and Negative Syndrome ... Harrison G: Ethnic disadvantage and schizophrenia. Acta Psychiatr Scand 2000, 102:38-43. 12. Pascoe EA, Smart Richman L: Perceived discrimination and health: a meta-analytic review...

Ngày tải lên: 11/08/2014, 15:22