... Bioinformatics 2008, 9:498.6. Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han CG,Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H,Honda T, Sasakawa C, Ogasawara ... boundary. If no repeat was found, a second search of repeats of length >10 bp with a Hamming distance of 1was carried out. A final scan was done in case of repea tdetection failure, for exact ... thealignment.Given the abundance of annotated data available forE. coli in databases, we selected this species to performamappingoftheVSstoavailableannotationssuchasbacteriophages, genomic islands, clustered,...