... S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick ... computational analysis. WS and DH analyzed thedata. WS, DH and ML wrote the manuscript. All authors read and approved thefinal manuscript.AcknowledgementsWe thank Benjamin Haley for sharing ... apparent false negative rate of approxi-mately 5% and a false discovery rate of approximately19%.To systematically compare the miRTRAP and miRDeepmethods, we tested the new Ciona library data using...