Báo cáo khoa học: "Extracting Regulatory Gene Expression Networks from PubMed" pptx

... Extracting Regulatory Gene Expression Networks from PubMed Jasmin ˇ Sari ´ c EML Research gGmbH Heidelberg, Germany saric@eml-r.org Lars ... relevant for the gene transcription domain, e.g. [ nxgene The GAL4 gene ]. L4 Relation chunking Relations between entities are recog- nized, e.g. The expression of the cy- tochrome genes CYC1 and ... we recognize gene noun phrases: [ nx...

Ngày tải lên: 31/03/2014, 03:20

... Tokyo, Japan). Expression of the Sll1330 protein in E. coli Overexpression of Sll1330 was carried out as described pre- viously [40] with some modification. The sll1330 gene was cloned from PCC 6803 ... C, Hua Q & Shimizu K (2002) Integration of the information from gene expression and metabolic fluxes for the analysis of the regulatory mechanisms in Syn- echocystis. Appl Micr...

Ngày tải lên: 16/03/2014, 04:20

... we generated error-driven transformation rules from the incorrectly annotated sentences. Transformation templates we defined are given in Table 4. Numerous transformation rules were generated ... comparison expressions. Hence, we build a comparison lexicon as follows: ▪ Comparison Lexicon = К ling U {Additional keywords that are frequently used for actual comparative expressions...

Ngày tải lên: 20/02/2014, 04:20

... engineering is desired. Paraphrases can be extracted from non-parallel corpora using contextual similarity (Lin, 1998). They can also be obtained from parallel corpora if such data is available (Barzilay ... of 13,898 duplicate bug reports from OpenOffice. Each duplicate bug report is associ- ated to a master report—there is one master re- port for each unique bug. From this informatio...

Ngày tải lên: 08/03/2014, 01:20

... comparable corpora from the Romanian translations of the European Union’s acquis communautaire which we mined from the Web, and has about 10M English words. We downloaded comparable data from three on- line ... boxes from the figure show, some parallel fragments of data do exist; but they are present at the sub-sentential level. In this paper, we present a method for extracting such pa...

Ngày tải lên: 08/03/2014, 02:21

... distinct function(s) for these two genes during vertebrate development. Although the fabp4 and fabp3 cDNAs from four Antarctic fishes were isolated from the heart, and both gene transcripts were abundant ... and fabp4 transcripts detected by RT-PCR in RNA extracted from adult tissues. RT-PCR products were gener- ated from total RNA extracted from various adult zebrafish tissues (ind...

Ngày tải lên: 07/03/2014, 10:20

... of these genes. Here, we describe the cloning and genomic structure of a hypoxia-responsive glucose transporter gene, gcGLUT from the grass carp and the characterization of its in vivo expression ... performed by normalizing gcGLUT expression levels against the 28S rRNA. Ó FEBS 2003 A hypoxia-responsive glucose transporter gene from grass carp (Eur. J. Biochem. 270) 3015 genes, and...

Ngày tải lên: 17/03/2014, 03:20

... so far from the insect Ceratitis capitata and from human exhibit ribonucleo- lytic activity. In this work, we report the genomic organization and molec- ular evolution of the RNase j gene from ... the expression profile of the RNase j gene at various developmental stages and in several tissues of the insect C. capitata. We have also determined the general genomic organization of th...

Ngày tải lên: 23/03/2014, 06:20

... initi- ation sites of the HO-2 gene and confirmed that the HO-2 gene promoter is juxtaposed to the HSCARG gene in the opposite direction. Thus, the HO-2 gene and the HSCARG gene share a common promoter ... (1% oxygen) decreased the expression levels of HO-1 protein in YN-1 cells (Fig. 3A), despite the increased expression of HO-1 mRNA (Fig. 5A). On the other hand, the expression...

Ngày tải lên: 19/02/2014, 06:20

... HI-like genes are also found from genomes of bacteria classified as Actin- omycetales, i.e., Mycobacterium, Thermobifida, Nocar- dia, Corynebacterium and Streptomyces. Among them, the SCO2299 gene from ... domains. Multiple RNase H genes in the S. coelicolor genome The S. coeicolor genome contains two additional RNase H homologous genes besides the SCO2299 gene [26]. One is the SCO5812...

Ngày tải lên: 19/02/2014, 18:20